HL_5L3P_025

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

G(PSU)GCUAACGU

Length

10 nucleotides

Bulged bases

5L3P|1|A|U|958, 5L3P|1|A|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5L3P_025 not in the Motif Atlas

Homologous match to HL_5J7L_159

Geometric discrepancy: 0.158

The information below is about HL_5J7L_159

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5L3P|1|A|G|954
5L3P|1|A|PSU|955
5L3P|1|A|G|956
5L3P|1|A|C|957
5L3P|1|A|U|958
5L3P|1|A|A|959
5L3P|1|A|A|960
5L3P|1|A|C|961
5L3P|1|A|G|962
5L3P|1|A|U|963

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain Q

50S ribosomal protein L16