5L3P Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5L3P_001 | No text annotation | ||
| HL_5L3P_002 | No text annotation | ||
| HL_5L3P_003 | No text annotation | ||
| HL_5L3P_004 | No text annotation | ||
| HL_5L3P_108 | No text annotation | ||
| HL_5L3P_005 | No text annotation | ||
| HL_5L3P_006 | No text annotation | ||
| HL_5L3P_007 | No text annotation | ||
| HL_5L3P_008 | No text annotation | ||
| HL_5L3P_009 | T-loop with 2 stacked bulged bases | ||
| HL_5L3P_010 | T-loop with unstacked turn | ||
| HL_5L3P_011 | No text annotation | ||
| HL_5L3P_116 | No text annotation | ||
| HL_5L3P_012 | Pseudoknot geometry | ||
| HL_5L3P_013 | GNRA | ||
| HL_5L3P_014 | GNRA | ||
| HL_5L3P_109 | No text annotation | ||
| HL_5L3P_015 | No text annotation | ||
| HL_5L3P_117 | Mini UNCG with extended bulge | ||
| HL_5L3P_016 | T-loop with 2 stacked bulged bases | ||
| HL_5L3P_017 | No text annotation | ||
| HL_5L3P_018 | GNRA | ||
| HL_5L3P_019 | No text annotation | ||
| HL_5L3P_020 | GNRA wlth tandem sheared | ||
| HL_5L3P_021 | No text annotation | ||
| HL_5L3P_118 | No text annotation | ||
| HL_5L3P_022 | No text annotation | ||
| HL_5L3P_023 | No text annotation | ||
| HL_5L3P_024 | No text annotation | ||
| HL_5L3P_025 | No text annotation | ||
| HL_5L3P_110 | GNRA | ||
| HL_5L3P_026 | No text annotation | ||
| HL_5L3P_027 | GNRA wlth tandem sheared | ||
| HL_5L3P_028 | No text annotation | ||
| HL_5L3P_111 | No text annotation | ||
| HL_5L3P_119 | No text annotation | ||
| HL_5L3P_029 | GNRA | ||
| HL_5L3P_030 | T-loop with 2 stacked bulged bases | ||
| HL_5L3P_031 | Pseudoknot geometry with 3' bulge | ||
| HL_5L3P_032 | GNRA | ||
| HL_5L3P_033 | No text annotation | ||
| HL_5L3P_034 | No text annotation | ||
| HL_5L3P_035 | Pseudoknot geometry with 3' bulge | ||
| HL_5L3P_112 | No text annotation | ||
| HL_5L3P_036 | No text annotation | ||
| HL_5L3P_037 | Mini UNCG | ||
| HL_5L3P_038 | No text annotation | ||
| HL_5L3P_039 | GNRA | ||
| HL_5L3P_040 | No text annotation | ||
| HL_5L3P_041 | No text annotation | ||
| HL_5L3P_042 | No text annotation | ||
| HL_5L3P_043 | No text annotation | ||
| HL_5L3P_120 | No text annotation | ||
| HL_5L3P_044 | GNRA related | ||
| HL_5L3P_045 | GNRA variation | ||
| HL_5L3P_046 | No text annotation | ||
| HL_5L3P_047 | No text annotation | ||
| HL_5L3P_048 | No text annotation | ||
| HL_5L3P_049 | No text annotation | ||
| HL_5L3P_050 | No text annotation | ||
| HL_5L3P_051 | No text annotation | ||
| HL_5L3P_052 | No text annotation | ||
| HL_5L3P_053 | No text annotation | ||
| HL_5L3P_054 | Pseudoknot geometry | ||
| HL_5L3P_055 | GNRA | ||
| HL_5L3P_056 | GNRA | ||
| HL_5L3P_057 | No text annotation | ||
| HL_5L3P_058 | No text annotation | ||
| HL_5L3P_059 | GNRA variation | ||
| HL_5L3P_060 | No text annotation | ||
| HL_5L3P_061 | GNRA | ||
| HL_5L3P_062 | GNRA | ||
| HL_5L3P_063 | Ribsomal LSU H95 | ||
| HL_5L3P_064 | No text annotation | ||
| HL_5L3P_065 | UNCG variation | ||
| HL_5L3P_066 | No text annotation | ||
| HL_5L3P_067 | GNRA | ||
| HL_5L3P_113 | No text annotation | ||
| HL_5L3P_068 | No text annotation | ||
| HL_5L3P_069 | Mini UNCG | ||
| HL_5L3P_114 | No text annotation | ||
| HL_5L3P_070 | No text annotation | ||
| HL_5L3P_071 | No text annotation | ||
| HL_5L3P_072 | GNRA | ||
| HL_5L3P_073 | GNRA | ||
| HL_5L3P_074 | No text annotation | ||
| HL_5L3P_075 | GNRA related | ||
| HL_5L3P_076 | GNRA | ||
| HL_5L3P_077 | No text annotation | ||
| HL_5L3P_121 | No text annotation | ||
| HL_5L3P_078 | UNCG | ||
| HL_5L3P_115 | tRNA anticodon loop | ||
| HL_5L3P_079 | GNRA | ||
| HL_5L3P_080 | UNCG | ||
| HL_5L3P_081 | GNRA wlth extra near cWW | ||
| HL_5L3P_082 | No text annotation | ||
| HL_5L3P_122 | GNRA variation | ||
| HL_5L3P_083 | GNRA-like with tWH | ||
| HL_5L3P_084 | No text annotation | ||
| HL_5L3P_085 | GNRA | ||
| HL_5L3P_086 | No text annotation | ||
| HL_5L3P_087 | No text annotation | ||
| HL_5L3P_088 | GNRA | ||
| HL_5L3P_089 | GNRA | ||
| HL_5L3P_090 | No text annotation | ||
| HL_5L3P_091 | GNRA | ||
| HL_5L3P_092 | No text annotation | ||
| HL_5L3P_093 | GNRA | ||
| HL_5L3P_094 | T-loop related | ||
| HL_5L3P_095 | No text annotation | ||
| HL_5L3P_096 | GNRA | ||
| HL_5L3P_097 | GNRA | ||
| HL_5L3P_098 | T-loop with 3 stacked bulged bases | ||
| HL_5L3P_099 | No text annotation | ||
| HL_5L3P_100 | UNCG | ||
| HL_5L3P_101 | GNRA | ||
| HL_5L3P_102 | tRNA D-loop | ||
| HL_5L3P_103 | tRNA anticodon loop | ||
| HL_5L3P_104 | T-loop with 2 stacked bulged bases | ||
| HL_5L3P_105 | No text annotation | ||
| HL_5L3P_106 | tRNA anticodon loop | ||
| HL_5L3P_107 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5L3P_001 | Triple sheared with non-canonical cWW | ||
| IL_5L3P_002 | Single bulged A | ||
| IL_5L3P_167 | No text annotation | ||
| IL_5L3P_003 | Minor groove platform with extra cWW | ||
| IL_5L3P_199 | Minor groove platform | ||
| IL_5L3P_004 | Kink-turn | ||
| IL_5L3P_005 | Single stack bend | ||
| IL_5L3P_006 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_5L3P_168 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_5L3P_007 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_5L3P_008 | No text annotation | ||
| IL_5L3P_009 | No text annotation | ||
| IL_5L3P_169 | No text annotation | ||
| IL_5L3P_010 | No text annotation | ||
| IL_5L3P_011 | No text annotation | ||
| IL_5L3P_012 | Double sheared | ||
| IL_5L3P_013 | Isolated non-canonical cWW pair | ||
| IL_5L3P_014 | AAA cross-strand stack | ||
| IL_5L3P_015 | Isolated non-canonical cWW pair | ||
| IL_5L3P_016 | tHW-tHW cross-strand stack | ||
| IL_5L3P_017 | Single bulged A | ||
| IL_5L3P_018 | Single bulged G | ||
| IL_5L3P_019 | Triple sheared | ||
| IL_5L3P_020 | Major groove platform | ||
| IL_5L3P_021 | Multiple bulged bases | ||
| IL_5L3P_200 | 90 degree turn | ||
| IL_5L3P_022 | No text annotation | ||
| IL_5L3P_201 | Stack outside cWW | ||
| IL_5L3P_023 | Single stack bend | ||
| IL_5L3P_024 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_5L3P_170 | No text annotation | ||
| IL_5L3P_025 | Single bulged G | ||
| IL_5L3P_026 | C-loop with bulged stacked A's | ||
| IL_5L3P_027 | Isolated cWS basepair | ||
| IL_5L3P_028 | Double sheared with non-canonical cWW | ||
| IL_5L3P_202 | Isolated non-canonical cWW pair | ||
| IL_5L3P_029 | Tandem non-canonical cWW pairs | ||
| IL_5L3P_171 | Double sheared with non-canonical cWW | ||
| IL_5L3P_030 | Single bulged C | ||
| IL_5L3P_031 | UAA/GAN with extra cWW | ||
| IL_5L3P_172 | UAA/GAN | ||
| IL_5L3P_032 | SSU/LSU pseudoknot | ||
| IL_5L3P_033 | Single bulged U | ||
| IL_5L3P_034 | Kink-turn related | ||
| IL_5L3P_035 | No text annotation | ||
| IL_5L3P_036 | Isolated non-canonical cWW pair | ||
| IL_5L3P_173 | No text annotation | ||
| IL_5L3P_037 | No text annotation | ||
| IL_5L3P_203 | Isolated cWS basepair | ||
| IL_5L3P_038 | Tandem non-canonical cWW pairs | ||
| IL_5L3P_039 | No text annotation | ||
| IL_5L3P_040 | Kink-turn | ||
| IL_5L3P_041 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_5L3P_042 | Major groove platform; stack outside cWW | ||
| IL_5L3P_043 | C-loop | ||
| IL_5L3P_044 | UAA/GAN | ||
| IL_5L3P_045 | tSH-tHW-tHS | ||
| IL_5L3P_046 | No text annotation | ||
| IL_5L3P_047 | UAA/GAN | ||
| IL_5L3P_048 | Tandem non-canonical cWW pairs | ||
| IL_5L3P_049 | tSH-tHW | ||
| IL_5L3P_050 | No text annotation | ||
| IL_5L3P_174 | tSH-tHW-tHS | ||
| IL_5L3P_051 | No text annotation | ||
| IL_5L3P_052 | 180 degree turn | ||
| IL_5L3P_053 | Single bulged A | ||
| IL_5L3P_054 | UAA/GAN variation | ||
| IL_5L3P_055 | No text annotation | ||
| IL_5L3P_056 | Isolated tWW turn | ||
| IL_5L3P_057 | Major groove platform; stack outside cWW | ||
| IL_5L3P_175 | No text annotation | ||
| IL_5L3P_058 | Intercalated tWH | ||
| IL_5L3P_059 | tSH-tSH-tHH-tHS | ||
| IL_5L3P_176 | No text annotation | ||
| IL_5L3P_060 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_5L3P_061 | Triple sheared | ||
| IL_5L3P_062 | Single bulged A | ||
| IL_5L3P_063 | Kink-turn related | ||
| IL_5L3P_064 | Minor groove platform, major groove intercalation | ||
| IL_5L3P_065 | Major groove intercalation | ||
| IL_5L3P_066 | Major groove minor groove platform; mini C-loop | ||
| IL_5L3P_177 | No text annotation | ||
| IL_5L3P_067 | UAA/GAN related | ||
| IL_5L3P_068 | Bulged stacked bases | ||
| IL_5L3P_069 | No text annotation | ||
| IL_5L3P_070 | Major groove platform | ||
| IL_5L3P_071 | No text annotation | ||
| IL_5L3P_072 | No text annotation | ||
| IL_5L3P_204 | Single bulged U | ||
| IL_5L3P_073 | Not an internal loop | ||
| IL_5L3P_074 | Minor groove platform | ||
| IL_5L3P_075 | Isolated tHS basepair with bulges | ||
| IL_5L3P_076 | Isolated non-canonical cWW pair | ||
| IL_5L3P_178 | No text annotation | ||
| IL_5L3P_077 | Other IL | ||
| IL_5L3P_205 | Isolated non-canonical cWW pair | ||
| IL_5L3P_078 | No text annotation | ||
| IL_5L3P_079 | Single bulged U | ||
| IL_5L3P_080 | Double sheared | ||
| IL_5L3P_081 | No text annotation | ||
| IL_5L3P_082 | Major groove platform with extra pair | ||
| IL_5L3P_179 | Major groove platform | ||
| IL_5L3P_083 | Major groove minor groove platform with extra cWW | ||
| IL_5L3P_084 | Double sheared with non-canonical cWW | ||
| IL_5L3P_180 | Major groove platform | ||
| IL_5L3P_085 | No text annotation | ||
| IL_5L3P_086 | Isolated non-canonical cWW with bulges | ||
| IL_5L3P_087 | No text annotation | ||
| IL_5L3P_088 | Major groove platform with intercalation | ||
| IL_5L3P_089 | No text annotation | ||
| IL_5L3P_090 | Single bulged A | ||
| IL_5L3P_091 | tSH-tHS-tHW | ||
| IL_5L3P_092 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_5L3P_093 | C-loop | ||
| IL_5L3P_094 | UAA/GAN related, with intercalation | ||
| IL_5L3P_095 | Multiple bulged bases | ||
| IL_5L3P_096 | UAA/GAN with extra cWW | ||
| IL_5L3P_097 | No text annotation | ||
| IL_5L3P_098 | Major groove intercalation | ||
| IL_5L3P_099 | Multiple bulged bases with non-canonical cWW | ||
| IL_5L3P_100 | tHS double platform | ||
| IL_5L3P_101 | Major groove intercalation | ||
| IL_5L3P_181 | No text annotation | ||
| IL_5L3P_102 | No text annotation | ||
| IL_5L3P_206 | Major groove minor groove platform; mini C-loop | ||
| IL_5L3P_103 | No text annotation | ||
| IL_5L3P_104 | Bacterial 5S Loop E | ||
| IL_5L3P_105 | Single bulged G | ||
| IL_5L3P_106 | Single bulged A | ||
| IL_5L3P_107 | No text annotation | ||
| IL_5L3P_108 | Minor groove platform | ||
| IL_5L3P_109 | Multiple bulged bases | ||
| IL_5L3P_110 | Minor groove platform with extra cWW | ||
| IL_5L3P_111 | Minor groove platform | ||
| IL_5L3P_182 | No text annotation | ||
| IL_5L3P_112 | Major groove intercalation | ||
| IL_5L3P_183 | Single bulged G, near cWW | ||
| IL_5L3P_113 | Isolated non-canonical cWW pair | ||
| IL_5L3P_114 | Minor groove platform related | ||
| IL_5L3P_115 | Isolated cWH basepair | ||
| IL_5L3P_184 | No text annotation | ||
| IL_5L3P_116 | tWH-tWH-tHW-tHW | ||
| IL_5L3P_117 | Minor groove platform | ||
| IL_5L3P_118 | Kink-turn with non-sequential stacking | ||
| IL_5L3P_119 | No text annotation | ||
| IL_5L3P_185 | No text annotation | ||
| IL_5L3P_120 | C-loop | ||
| IL_5L3P_121 | Single bulged U | ||
| IL_5L3P_122 | C-loop | ||
| IL_5L3P_123 | Single bulged G | ||
| IL_5L3P_124 | No text annotation | ||
| IL_5L3P_125 | No text annotation | ||
| IL_5L3P_126 | tSH-tHW-tWW | ||
| IL_5L3P_127 | No text annotation | ||
| IL_5L3P_128 | SSU/LSU pseudoknot | ||
| IL_5L3P_129 | Kink-turn related | ||
| IL_5L3P_130 | No text annotation | ||
| IL_5L3P_131 | tSH-tHW-tHS | ||
| IL_5L3P_186 | No text annotation | ||
| IL_5L3P_132 | Major groove platform | ||
| IL_5L3P_133 | Major groove minor groove platform; mini C-loop | ||
| IL_5L3P_134 | No text annotation | ||
| IL_5L3P_187 | Single stack bend | ||
| IL_5L3P_135 | Single stack bend | ||
| IL_5L3P_136 | Partly complementary | ||
| IL_5L3P_207 | Tandem non-canonical cWW pairs | ||
| IL_5L3P_208 | Triple non-canonical cWW pairs | ||
| IL_5L3P_137 | Kink-turn | ||
| IL_5L3P_188 | Kink-turn | ||
| IL_5L3P_138 | Left turn | ||
| IL_5L3P_139 | tSH-tHW-tHS | ||
| IL_5L3P_189 | No text annotation | ||
| IL_5L3P_140 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_5L3P_141 | Decoding loop related | ||
| IL_5L3P_142 | Single bulged G | ||
| IL_5L3P_143 | No text annotation | ||
| IL_5L3P_144 | No text annotation | ||
| IL_5L3P_145 | Minor groove platform | ||
| IL_5L3P_146 | No text annotation | ||
| IL_5L3P_190 | Single stack bend | ||
| IL_5L3P_191 | No text annotation | ||
| IL_5L3P_147 | Single bulged U | ||
| IL_5L3P_148 | No text annotation | ||
| IL_5L3P_192 | No text annotation | ||
| IL_5L3P_149 | Minor groove platform | ||
| IL_5L3P_150 | Single bulged A | ||
| IL_5L3P_151 | Isolated non-canonical cWW pair | ||
| IL_5L3P_193 | No text annotation | ||
| IL_5L3P_152 | No text annotation | ||
| IL_5L3P_209 | No text annotation | ||
| IL_5L3P_153 | Minor groove platform | ||
| IL_5L3P_154 | No text annotation | ||
| IL_5L3P_194 | No text annotation | ||
| IL_5L3P_155 | No text annotation | ||
| IL_5L3P_210 | No text annotation | ||
| IL_5L3P_156 | 180 degree turn | ||
| IL_5L3P_157 | Double sheared with non-canonical cWW | ||
| IL_5L3P_195 | No text annotation | ||
| IL_5L3P_158 | No text annotation | ||
| IL_5L3P_159 | No text annotation | ||
| IL_5L3P_160 | No text annotation | ||
| IL_5L3P_161 | No text annotation | ||
| IL_5L3P_162 | Isolated non-canonical cWW pair | ||
| IL_5L3P_196 | Tandem non-canonical cWW pairs | ||
| IL_5L3P_197 | Double sheared | ||
| IL_5L3P_163 | No text annotation | ||
| IL_5L3P_198 | No text annotation | ||
| IL_5L3P_164 | Triple sheared related | ||
| IL_5L3P_165 | Single bulged A | ||
| IL_5L3P_166 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5L3P_001 | No text annotation | ||
| J3_5L3P_026 | No text annotation | ||
| J3_5L3P_027 | No text annotation | ||
| J3_5L3P_002 | No text annotation | ||
| J3_5L3P_042 | No text annotation | ||
| J3_5L3P_028 | No text annotation | ||
| J3_5L3P_003 | No text annotation | ||
| J3_5L3P_029 | No text annotation | ||
| J3_5L3P_004 | No text annotation | ||
| J3_5L3P_005 | No text annotation | ||
| J3_5L3P_006 | No text annotation | ||
| J3_5L3P_007 | No text annotation | ||
| J3_5L3P_030 | No text annotation | ||
| J3_5L3P_008 | Kink-turn 3-way junction | ||
| J3_5L3P_009 | No text annotation | ||
| J3_5L3P_010 | No text annotation | ||
| J3_5L3P_031 | No text annotation | ||
| J3_5L3P_011 | No text annotation | ||
| J3_5L3P_012 | No text annotation | ||
| J3_5L3P_032 | No text annotation | ||
| J3_5L3P_013 | No text annotation | ||
| J3_5L3P_014 | No text annotation | ||
| J3_5L3P_033 | No text annotation | ||
| J3_5L3P_015 | No text annotation | ||
| J3_5L3P_043 | No text annotation | ||
| J3_5L3P_034 | No text annotation | ||
| J3_5L3P_035 | No text annotation | ||
| J3_5L3P_016 | No text annotation | ||
| J3_5L3P_036 | No text annotation | ||
| J3_5L3P_017 | No text annotation | ||
| J3_5L3P_018 | No text annotation | ||
| J3_5L3P_037 | No text annotation | ||
| J3_5L3P_019 | No text annotation | ||
| J3_5L3P_038 | No text annotation | ||
| J3_5L3P_020 | No text annotation | ||
| J3_5L3P_039 | No text annotation | ||
| J3_5L3P_021 | No text annotation | ||
| J3_5L3P_022 | No text annotation | ||
| J3_5L3P_040 | No text annotation | ||
| J3_5L3P_023 | No text annotation | ||
| J3_5L3P_024 | No text annotation | ||
| J3_5L3P_044 | No text annotation | ||
| J3_5L3P_041 | No text annotation | ||
| J3_5L3P_025 | No text annotation | ||
| J4_5L3P_001 | No text annotation | ||
| J4_5L3P_002 | No text annotation | ||
| J4_5L3P_003 | No text annotation | ||
| J4_5L3P_004 | No text annotation | ||
| J4_5L3P_005 | No text annotation | ||
| J4_5L3P_006 | No text annotation | ||
| J4_5L3P_007 | No text annotation | ||
| J4_5L3P_008 | No text annotation | ||
| J4_5L3P_016 | No text annotation | ||
| J4_5L3P_009 | No text annotation | ||
| J4_5L3P_010 | No text annotation | ||
| J4_5L3P_011 | No text annotation | ||
| J4_5L3P_017 | No text annotation | ||
| J4_5L3P_018 | No text annotation | ||
| J4_5L3P_012 | No text annotation | ||
| J4_5L3P_013 | No text annotation | ||
| J4_5L3P_014 | No text annotation | ||
| J4_5L3P_019 | tRNA junction | ||
| J4_5L3P_015 | No text annotation | ||
| J5_5L3P_001 | No text annotation | ||
| J5_5L3P_002 | No text annotation | ||
| J5_5L3P_003 | No text annotation | ||
| J5_5L3P_004 | No text annotation | ||
| J5_5L3P_005 | No text annotation | ||
| J5_5L3P_009 | No text annotation | ||
| J5_5L3P_006 | No text annotation | ||
| J5_5L3P_010 | No text annotation | ||
| J5_5L3P_007 | No text annotation | ||
| J5_5L3P_008 | No text annotation | ||
| J6_5L3P_001 | No text annotation | ||
| J6_5L3P_002 | No text annotation | ||
| J7_5L3P_001 | No text annotation | ||
| J7_5L3P_002 | No text annotation |
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