HL_5L3P_033

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

5L3P|1|A|U|1396, 5L3P|1|A|U|1397

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5L3P_033 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.2089

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5L3P|1|A|G|1389
5L3P|1|A|U|1390
5L3P|1|A|U|1391
5L3P|1|A|A|1392
5L3P|1|A|A|1393
5L3P|1|A|U|1394
5L3P|1|A|A|1395
5L3P|1|A|U|1396
5L3P|1|A|U|1397
5L3P|1|A|C|1398

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L23