HL_5L3P_038

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

5L3P|1|A|A|1614, 5L3P|1|A|A|1616

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5L3P_038 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1386

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

5L3P|1|A|C|1612
5L3P|1|A|G|1613
5L3P|1|A|A|1614
5L3P|1|A|C|1615
5L3P|1|A|A|1616
5L3P|1|A|C|1617
5L3P|1|A|6MZ|1618
5L3P|1|A|G|1619

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain W

50S ribosomal protein L22