3D structure

PDB id
5L3P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CUUUAAG
Length
7 nucleotides
Bulged bases
5L3P|1|A|U|2797, 5L3P|1|A|A|2800
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5L3P_065 not in the Motif Atlas
Homologous match to HL_5J7L_200
Geometric discrepancy: 0.5471
The information below is about HL_5J7L_200
Detailed Annotation
UNCG variation
Broad Annotation
UNCG variation
Motif group
HL_08100.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
4

Unit IDs

5L3P|1|A|C|2795
5L3P|1|A|U|2796
5L3P|1|A|U|2797
5L3P|1|A|U|2798
5L3P|1|A|A|2799
5L3P|1|A|A|2800
5L3P|1|A|G|2801

Current chains

Chain A
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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