HL_5L3P_066

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

5L3P|1|A|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5L3P_066 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.1002

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5L3P|1|A|G|2819
5L3P|1|A|A|2820
5L3P|1|A|A|2821
5L3P|1|A|G|2822
5L3P|1|A|A|2823
5L3P|1|A|C|2824
5L3P|1|A|G|2825
5L3P|1|A|A|2826
5L3P|1|A|C|2827

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L3

Chain R

50S ribosomal protein L17