HL_5L3P_096

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

5L3P|1|a|U|1168

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5L3P_096 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.3409

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

5L3P|1|a|U|1165
5L3P|1|a|G|1166
5L3P|1|a|A|1167
5L3P|1|a|U|1168
5L3P|1|a|A|1169
5L3P|1|a|A|1170
5L3P|1|a|A|1171

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain u

30S ribosomal protein S21