HL_5L3P_105

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCAG(H2U)(H2U)GG(H2U)AGA

Length

12 nucleotides

Bulged bases

5L3P|1|y|G|18, 5L3P|1|y|G|19

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5L3P_105 not in the Motif Atlas

Homologous match to HL_1SER_001

Geometric discrepancy: 0.5317

The information below is about HL_1SER_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40252.3

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

5L3P|1|y|U|12
5L3P|1|y|C|13
5L3P|1|y|A|14
5L3P|1|y|G|15
5L3P|1|y|H2U|16
5L3P|1|y|H2U|17
5L3P|1|y|G|18
5L3P|1|y|G|19
5L3P|1|y|H2U|20
5L3P|1|y|A|21
5L3P|1|y|G|22
5L3P|1|y|A|23

Current chains

Chain y

deacylated A/R-tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain z

GTP pyrophosphokinase,GTP pyrophosphokinase,GTP pyrophosphokinase