HL_5L3P_121

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

5L3P|1|a|C|328

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5L3P_121 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.2422

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5L3P|1|a|A|320
5L3P|1|a|A|321
5L3P|1|a|C|322
5L3P|1|a|U|323
5L3P|1|a|G|324
5L3P|1|a|A|325
5L3P|1|a|G|326
5L3P|1|a|A|327
5L3P|1|a|C|328
5L3P|1|a|A|329
5L3P|1|a|C|330
5L3P|1|a|G|331
5L3P|1|a|G|332
5L3P|1|a|U|333

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20