HL_5LI0_005

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAUACAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LI0_005 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.3193

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5LI0|1|A|U|159
5LI0|1|A|G|160
5LI0|1|A|A|161
5LI0|1|A|A|162
5LI0|1|A|U|163
5LI0|1|A|A|164
5LI0|1|A|C|165
5LI0|1|A|A|166
5LI0|1|A|U|167
5LI0|1|A|A|168
5LI0|1|A|G|169

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L28