HL_5LI0_013

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGCACGUGAAAUU

Length

13 nucleotides

Bulged bases

5LI0|1|A|G|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LI0_013 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.2063

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5LI0|1|A|A|427
5LI0|1|A|G|428
5LI0|1|A|C|429
5LI0|1|A|A|430
5LI0|1|A|C|431
5LI0|1|A|G|432
5LI0|1|A|U|433
5LI0|1|A|G|434
5LI0|1|A|A|435
5LI0|1|A|A|436
5LI0|1|A|A|437
5LI0|1|A|U|438
5LI0|1|A|U|439

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L28