HL_5LI0_014

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

5LI0|1|A|G|457

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LI0_014 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1559

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5LI0|1|A|G|456
5LI0|1|A|G|457
5LI0|1|A|A|458
5LI0|1|A|C|459
5LI0|1|A|C|460
5LI0|1|A|A|461
5LI0|1|A|U|462
5LI0|1|A|C|463

Current chains

Chain A

23S ribosomal RNA

Nearby chains