HL_5LI0_048

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

5LI0|1|A|A|2057, 5LI0|1|A|A|2058, 5LI0|1|A|G|2059

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LI0_048 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1711

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

8

Unit IDs

5LI0|1|A|G|2054
5LI0|1|A|U|2055
5LI0|1|A|G|2056
5LI0|1|A|A|2057
5LI0|1|A|A|2058
5LI0|1|A|G|2059
5LI0|1|A|A|2060
5LI0|1|A|U|2061
5LI0|1|A|G|2062
5LI0|1|A|C|2063

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L32

Chain E

50S ribosomal protein L3