HL_5LI0_049

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCUAG

Length

6 nucleotides

Bulged bases

5LI0|1|A|C|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LI0_049 not in the Motif Atlas

Homologous match to HL_5J7L_184

Geometric discrepancy: 0.3306

The information below is about HL_5J7L_184

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79299.1

Basepair signature

cWW-tSW-R

Number of instances in this motif group

44

Unit IDs

5LI0|1|A|C|2170
5LI0|1|A|G|2171
5LI0|1|A|C|2172
5LI0|1|A|U|2173
5LI0|1|A|A|2174
5LI0|1|A|G|2175

Current chains

Chain A

23S ribosomal RNA

Nearby chains