HL_5LI0_057

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

5LI0|1|A|C|2433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LI0_057 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.1471

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5LI0|1|A|C|2431
5LI0|1|A|G|2432
5LI0|1|A|C|2433
5LI0|1|A|A|2434
5LI0|1|A|U|2435
5LI0|1|A|G|2436
5LI0|1|A|G|2437
5LI0|1|A|A|2438
5LI0|1|A|A|2439
5LI0|1|A|G|2440

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L15