HL_5LI0_059

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGUAGUCG

Length

8 nucleotides

Bulged bases

5LI0|1|A|G|2556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LI0_059 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.2441

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

5LI0|1|A|U|2555
5LI0|1|A|G|2556
5LI0|1|A|U|2557
5LI0|1|A|A|2558
5LI0|1|A|G|2559
5LI0|1|A|U|2560
5LI0|1|A|C|2561
5LI0|1|A|G|2562

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain H

50S ribosomal protein L6