HL_5LI0_102
3D structure
- PDB id
- 5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUACUAACGA
- Length
- 10 nucleotides
- Bulged bases
- 5LI0|1|A|U|60, 5LI0|1|A|U|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LI0_102 not in the Motif Atlas
- Homologous match to HL_4WF9_067
- Geometric discrepancy: 0.2038
- The information below is about HL_4WF9_067
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_93438.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5LI0|1|A|U|59
5LI0|1|A|U|60
5LI0|1|A|A|61
5LI0|1|A|C|62
5LI0|1|A|U|63
5LI0|1|A|A|64
5LI0|1|A|A|65
5LI0|1|A|C|66
5LI0|1|A|G|67
5LI0|1|A|A|68
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L29
- Chain 6
- 50S ribosomal protein L34
- Chain W
- 50S ribosomal protein L23
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