HL_5LI0_110

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5LI0|1|a|U|1041, 5LI0|1|a|C|1042

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LI0_110 not in the Motif Atlas

Geometric match to HL_5HR7_005

Geometric discrepancy: 0.368

The information below is about HL_5HR7_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.2

Basepair signature

cWW-F-F

Number of instances in this motif group

5

Unit IDs

5LI0|1|a|C|1039
5LI0|1|a|U|1040
5LI0|1|a|U|1041
5LI0|1|a|C|1042
5LI0|1|a|G|1043
5LI0|1|a|G|1044

Current chains

Chain a

16S ribosomal RNA

Nearby chains