HL_5LJ3_001
3D structure
- PDB id
- 5LJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the core of the yeast spliceosome immediately after branching
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUGCCUUUUACCA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5LJ3|1|U|U|91
5LJ3|1|U|U|92
5LJ3|1|U|G|93
5LJ3|1|U|C|94
5LJ3|1|U|C|95
5LJ3|1|U|U|96
5LJ3|1|U|U|97
5LJ3|1|U|U|98
5LJ3|1|U|U|99
5LJ3|1|U|A|100
5LJ3|1|U|C|101
5LJ3|1|U|C|102
5LJ3|1|U|A|103
Current chains
- Chain U
- U5 snRNA (small nuclear RNA)
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain E
- Exon 1 (5' exon) of UBC4 pre-mRNA
- Chain I
- Intron of UBC4 pre-mRNA
- Chain J
- PRP46
- Chain P
- CWC15
- Chain R
- Pre-mRNA-splicing factor CWC21
- Chain V
- U6 spliceosomal RNA; U6 snRNA
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