5LJ3 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5LJ3_001 | 1/U/91:103 | No text annotation | ||
| HL_5LJ3_002 | 1/V/70:76 | GNRA | homologous HL_6ASO_001 HL_34789.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5LJ3_003 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5LJ3_001 | 1/I/6:8, 1/V/45:47 | Isolated non-canonical cWW pair | geometric IL_5VCI_001 IL_68118.1 | |
| IL_5LJ3_014 | 1/I/58:66, 1/Z/38:43 | No text annotation | ||
| IL_5LJ3_015 | 1/I/69:71, 1/Z/34:35 | Multiple bulged bases | geometric IL_5WLH_001 NA | |
| IL_5LJ3_016 | 1/U/20:28, 1/U/125:132 | No text annotation | ||
| IL_5LJ3_003 | 1/U/32:34, 1/U/120:121 | No text annotation | ||
| IL_5LJ3_004 | 1/U/80:84, 1/U/110:112 | No text annotation | ||
| IL_5LJ3_005 | 1/V/58:59, 1/Z/23:26 | Multiple bulged bases | geometric IL_3IGI_013 IL_44609.1 | |
| IL_5LJ3_006 | 1/V/65:67, 1/V/81:82 | No text annotation | ||
| IL_5LJ3_007 | 1/V/67:68, 1/V/78:81 | Multiple bulged bases | geometric IL_7RQB_098 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5LJ3_012 | Isolated non-canonical cWW pair | ||
| IL_5LJ3_013 | Isolated non-canonical cWW pair | ||
| IL_5LJ3_002 | No text annotation | ||
| IL_5LJ3_008 | No text annotation | ||
| IL_5LJ3_009 | No text annotation | ||
| IL_5LJ3_010 | No text annotation | ||
| IL_5LJ3_011 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5LJ3_001 | 1/U/40:46, 1/U/69:79, 1/U/113:114 | No text annotation | ||
| J3_5LJ3_002 | 1/V/61:63, 1/V/84:93, 1/Z/12:21 | No text annotation |
Problematic loops
No problematic loops
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