HL_5LJ5_002
3D structure
- PDB id
- 5LJ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Overall structure of the yeast spliceosome immediately after branching.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 10 Å
Loop
- Sequence
- UGCAUAA
- Length
- 7 nucleotides
- Bulged bases
- 5LJ5|1|V|U|74
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LJ5_002 not in the Motif Atlas
- Homologous match to HL_6ASO_001
- Geometric discrepancy: 0.3887
- The information below is about HL_6ASO_001
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.4
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 399
Unit IDs
5LJ5|1|V|U|70
5LJ5|1|V|G|71
5LJ5|1|V|C|72
5LJ5|1|V|A|73
5LJ5|1|V|U|74
5LJ5|1|V|A|75
5LJ5|1|V|A|76
Current chains
- Chain V
- U6 snRNA (small nuclear RNA)
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain E
- Exon 1 (5' exon) of UBC4 pre-mRNA
- Chain J
- Pre-mRNA-splicing factor PRP46
- Chain O
- Pre-mRNA-splicing factor CEF1
- Chain P
- CWC15
- Chain U
- U5 spliceosomal RNA; U5 snRNA
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