HL_5LKS_005

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

5LKS|1|L5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LKS_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.3496

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

5LKS|1|L5|U|204
5LKS|1|L5|C|205
5LKS|1|L5|U|206
5LKS|1|L5|G|207
5LKS|1|L5|A|208
5LKS|1|L5|U|209
5LKS|1|L5|C|210
5LKS|1|L5|G|211

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LY

60S ribosomal protein L26

Chain Le

60S ribosomal protein L32