5LKS Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5LKS_141 | 1/L5/30:52 | No text annotation | ||
| HL_5LKS_002 | 1/L5/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_5LKS_003 | 1/L5/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_5LKS_005 | 1/L5/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_5LKS_006 | 1/L5/222:226 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_5LKS_113 | 1/L5/228:240 | No text annotation | ||
| HL_5LKS_007 | 1/L5/230:238 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_5LKS_142 | 1/L5/289:298 | T-loop related | homologous HL_8CRE_008 NA | |
| HL_5LKS_009 | 1/L5/314:323 | Pseudoknot geometry | geometric HL_5TBW_009 NA | |
| HL_5LKS_010 | 1/L5/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_5LKS_011 | 1/L5/393:398 | GNRA | homologous HL_5TBW_011 NA | |
| HL_5LKS_143 | 1/L5/1172:1189 | No text annotation | ||
| HL_5LKS_144 | 1/L5/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_8CRE_013 NA | |
| HL_5LKS_145 | 1/L5/1364:1373 | No text annotation | ||
| HL_5LKS_018 | 1/L5/1389:1394 | GNRA | homologous HL_8C3A_016 NA | |
| HL_5LKS_146 | 1/L5/1403:1414 | No text annotation | ||
| HL_5LKS_147 | 1/L5/1436:1448 | No text annotation | ||
| HL_5LKS_021 | 1/L5/1479:1486 | No text annotation | ||
| HL_5LKS_022 | 1/L5/1561:1566 | GNRA | homologous HL_8C3A_019 NA | |
| HL_5LKS_148 | 1/L5/1593:1602 | No text annotation | homologous HL_8CRE_019 NA | |
| HL_5LKS_116 | 1/L5/1624:1640 | No text annotation | ||
| HL_5LKS_024 | 1/L5/1626:1636 | No text annotation | ||
| HL_5LKS_025 | 1/L5/1675:1680 | Externally structured | homologous HL_5TBW_022 NA | |
| HL_5LKS_026 | 1/L5/1745:1785 | No text annotation | ||
| HL_5LKS_028 | 1/L5/1864:1870 | GNRA | homologous HL_5TBW_025 NA | |
| HL_5LKS_029 | 1/L5/1885:1894 | No text annotation | geometric HL_2ZZM_002 NA | |
| HL_5LKS_149 | 1/L5/1957:2026 | No text annotation | ||
| HL_5LKS_032 | 1/L5/2317:2322 | GNRA | homologous HL_8C3A_030 NA | |
| HL_5LKS_033 | 1/L5/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_031 NA | |
| HL_5LKS_150 | 1/L5/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_8CRE_031 NA | |
| HL_5LKS_035 | 1/L5/2458:2463 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_5LKS_036 | 1/L5/2479:2499 | No text annotation | ||
| HL_5LKS_037 | 1/L5/2523:2532 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_5LKS_038 | 1/L5/2557:2570 | No text annotation | geometric HL_5TBW_226 NA | |
| HL_5LKS_039 | 1/L5/2577:2584 | No text annotation | geometric HL_4V9F_003 HL_75660.6 | |
| HL_5LKS_040 | 1/L5/2624:2632 | No text annotation | geometric HL_8C3A_037 NA | |
| HL_5LKS_041 | 1/L5/2663:2671 | No text annotation | ||
| HL_5LKS_121 | 1/L5/2698:2718 | No text annotation | ||
| HL_5LKS_042 | 1/L5/2738:2742 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_5LKS_043 | 1/L5/2792:2799 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_5LKS_044 | 1/L5/2810:2816 | GNRA | homologous HL_5TBW_042 NA | |
| HL_5LKS_045 | 1/L5/2872:2877 | UNCG | homologous HL_8C3A_043 NA | |
| HL_5LKS_123 | 1/L5/3639:3649 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_5LKS_124 | 1/L5/3667:3675 | No text annotation | geometric HL_6D12_001 NA | |
| HL_5LKS_048 | 1/L5/3668:3674 | GNRA | homologous HL_8C3A_047 NA | |
| HL_5LKS_151 | 1/L5/3724:3730 | No text annotation | ||
| HL_5LKS_050 | 1/L5/3796:3804 | No text annotation | geometric HL_5TBW_050 NA | |
| HL_5LKS_051 | 1/L5/3839:3843 | No text annotation | ||
| HL_5LKS_052 | 1/L5/3873:3882 | No text annotation | homologous HL_5TBW_051 NA | |
| HL_5LKS_056 | 1/L5/4191:4204 | No text annotation | ||
| HL_5LKS_057 | 1/L5/4210:4222 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_5LKS_126 | 1/L5/4247:4261 | No text annotation | ||
| HL_5LKS_058 | 1/L5/4250:4258 | No text annotation | homologous HL_5TBW_056 NA | |
| HL_5LKS_059 | 1/L5/4270:4277 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_5LKS_060 | 1/L5/4301:4309 | No text annotation | homologous HL_5TBW_058 NA | |
| HL_5LKS_128 | 1/L5/4321:4326 | GNRA | homologous HL_8P9A_170 HL_34789.1 | |
| HL_5LKS_062 | 1/L5/4352:4362 | No text annotation | geometric HL_2ZZM_002 NA | |
| HL_5LKS_063 | 1/L5/4416:4426 | No text annotation | ||
| HL_5LKS_064 | 1/L5/4474:4481 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_5LKS_065 | 1/L5/4497:4503 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_5LKS_066 | 1/L5/4540:4545 | GNRA | homologous HL_5TBW_064 NA | |
| HL_5LKS_067 | 1/L5/4603:4608 | GNRA | homologous HL_8C3A_066 NA | |
| HL_5LKS_068 | 1/L5/4645:4652 | No text annotation | geometric HL_8H9D_001 NA | |
| HL_5LKS_069 | 1/L5/4688:4702 | No text annotation | homologous HL_5TBW_067 NA | |
| HL_5LKS_130 | 1/L5/4907:4914 | No text annotation | geometric HL_4WF9_011 HL_75660.6 | |
| HL_5LKS_072 | 1/L5/4975:4983 | No text annotation | homologous HL_5TBW_070 NA | |
| HL_5LKS_073 | 1/L5/5021:5028 | No text annotation | geometric HL_4V9F_011 HL_75660.6 | |
| HL_5LKS_132 | 1/L7/32:45 | No text annotation | homologous HL_4V9F_074 HL_97756.3 | |
| HL_5LKS_074 | 1/L7/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_5LKS_075 | 1/L7/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_5LKS_152 | 1/L8/46:57 | No text annotation | ||
| HL_5LKS_077 | 1/L8/68:90 | No text annotation | homologous HL_8C3A_075 NA | |
| HL_5LKS_078 | 1/L8/106:113 | No text annotation | geometric HL_2Y9H_005 HL_51020.1 | |
| HL_5LKS_153 | 1/L8/121:129 | No text annotation | ||
| HL_5LKS_080 | 1/S2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_5LKS_133 | 1/S2/63:85 | No text annotation | ||
| HL_5LKS_081 | 1/S2/69:80 | No text annotation | geometric HL_361D_002 NA | |
| HL_5LKS_082 | 1/S2/156:162 | GNRA related | homologous HL_4V88_188 NA | |
| HL_5LKS_083 | 1/S2/187:212 | No text annotation | ||
| HL_5LKS_085 | 1/S2/321:330 | No text annotation | ||
| HL_5LKS_086 | 1/S2/377:387 | No text annotation | ||
| HL_5LKS_087 | 1/S2/416:421 | No text annotation | homologous HL_4V88_194 NA | |
| HL_5LKS_088 | 1/S2/441:452 | No text annotation | homologous HL_4V88_195 NA | |
| HL_5LKS_089 | 1/S2/461:468 | No text annotation | geometric HL_6CF2_001 NA | |
| HL_5LKS_135 | 1/S2/491:509 | No text annotation | ||
| HL_5LKS_090 | 1/S2/496:506 | No text annotation | ||
| HL_5LKS_091 | 1/S2/535:548 | No text annotation | ||
| HL_5LKS_136 | 1/S2/618:623 | GNRA variation | homologous HL_8C3A_206 NA | |
| HL_5LKS_093 | 1/S2/820:828 | No text annotation | homologous HL_4V88_203 NA | |
| HL_5LKS_094 | 1/S2/833:841 | No text annotation | ||
| HL_5LKS_095 | 1/S2/884:902 | No text annotation | ||
| HL_5LKS_096 | 1/S2/957:966 | No text annotation | homologous HL_4V88_206 NA | |
| HL_5LKS_097 | 1/S2/993:1000 | No text annotation | ||
| HL_5LKS_098 | 1/S2/1054:1064 | No text annotation | homologous HL_4V88_208 NA | |
| HL_5LKS_099 | 1/S2/1112:1121 | No text annotation | ||
| HL_5LKS_100 | 1/S2/1141:1146 | GNRA | homologous HL_4V88_210 NA | |
| HL_5LKS_154 | 1/S2/1177:1184 | tRNA anticodon loop | geometric HL_3RG5_006 HL_45359.1 | |
| HL_5LKS_102 | 1/S2/1245:1254 | No text annotation | homologous HL_4V88_212 NA | |
| HL_5LKS_137 | 1/S2/1281:1316 | No text annotation | ||
| HL_5LKS_103 | 1/S2/1353:1358 | GNRA | homologous HL_4V88_214 NA | |
| HL_5LKS_138 | 1/S2/1363:1375 | No text annotation | ||
| HL_5LKS_104 | 1/S2/1365:1374 | No text annotation | ||
| HL_5LKS_155 | 1/S2/1402:1444 | No text annotation | ||
| HL_5LKS_106 | 1/S2/1460:1466 | UNCG variation | geometric HL_1P6V_001 NA | |
| HL_5LKS_107 | 1/S2/1565:1570 | GNRA | homologous HL_4V88_218 NA | |
| HL_5LKS_108 | 1/S2/1614:1625 | No text annotation | homologous HL_4V88_219 NA | |
| HL_5LKS_109 | 1/S2/1657:1667 | No text annotation | geometric HL_5J7L_029 NA | |
| HL_5LKS_156 | 1/S2/1846:1853 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5LKS_001 | No text annotation | ||
| HL_5LKS_004 | No text annotation | ||
| HL_5LKS_112 | No text annotation | ||
| HL_5LKS_008 | No text annotation | ||
| HL_5LKS_114 | No text annotation | ||
| HL_5LKS_012 | No text annotation | ||
| HL_5LKS_013 | No text annotation | ||
| HL_5LKS_014 | No text annotation | ||
| HL_5LKS_015 | No text annotation | ||
| HL_5LKS_016 | No text annotation | ||
| HL_5LKS_017 | No text annotation | ||
| HL_5LKS_019 | No text annotation | ||
| HL_5LKS_020 | No text annotation | ||
| HL_5LKS_115 | No text annotation | ||
| HL_5LKS_023 | No text annotation | ||
| HL_5LKS_117 | No text annotation | ||
| HL_5LKS_027 | No text annotation | ||
| HL_5LKS_030 | No text annotation | ||
| HL_5LKS_118 | No text annotation | ||
| HL_5LKS_031 | No text annotation | ||
| HL_5LKS_034 | No text annotation | ||
| HL_5LKS_119 | No text annotation | ||
| HL_5LKS_120 | No text annotation | ||
| HL_5LKS_122 | tRNA D-loop | ||
| HL_5LKS_046 | No text annotation | ||
| HL_5LKS_047 | No text annotation | ||
| HL_5LKS_049 | No text annotation | ||
| HL_5LKS_125 | No text annotation | ||
| HL_5LKS_053 | No text annotation | ||
| HL_5LKS_054 | No text annotation | ||
| HL_5LKS_055 | No text annotation | ||
| HL_5LKS_127 | tRNA anticodon loop | ||
| HL_5LKS_061 | No text annotation | ||
| HL_5LKS_129 | No text annotation | ||
| HL_5LKS_070 | No text annotation | ||
| HL_5LKS_071 | No text annotation | ||
| HL_5LKS_131 | No text annotation | ||
| HL_5LKS_076 | No text annotation | ||
| HL_5LKS_079 | No text annotation | ||
| HL_5LKS_084 | No text annotation | ||
| HL_5LKS_134 | No text annotation | ||
| HL_5LKS_092 | No text annotation | ||
| HL_5LKS_101 | No text annotation | ||
| HL_5LKS_105 | No text annotation | ||
| HL_5LKS_139 | No text annotation | ||
| HL_5LKS_110 | No text annotation | ||
| HL_5LKS_140 | No text annotation | ||
| HL_5LKS_111 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5LKS_242 | 1/L5/6:9, 1/L8/147:151 | Tandem non-canonical cWW pairs | geometric IL_4K27_001 NA | |
| IL_5LKS_243 | 1/L5/12:14, 1/L8/143:144 | No text annotation | homologous IL_8CRE_003 NA | |
| IL_5LKS_003 | 1/L5/16:18, 1/L8/139:141 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 NA | |
| IL_5LKS_004 | 1/L5/26:27, 1/L5/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_5LKS_005 | 1/L5/81:88, 1/L5/96:102 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_006 NA | |
| IL_5LKS_244 | 1/L5/118:122, 1/L5/147:153 | No text annotation | ||
| IL_5LKS_007 | 1/L5/125:126, 1/L5/142:144 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_5LKS_008 | 1/L5/168:173, 1/L5/263:267 | No text annotation | ||
| IL_5LKS_009 | 1/L5/174:189, 1/L5/252:262 | No text annotation | ||
| IL_5LKS_245 | 1/L5/174:191, 1/L5/250:262 | No text annotation | ||
| IL_5LKS_010 | 1/L5/195:196, 1/L5/244:246 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_5LKS_011 | 1/L5/199:201, 1/L5/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_5LKS_246 | 1/L5/339:342, 1/L8/32:33 | Minor groove platform, major groove intercalation | geometric IL_1U9S_005 NA | |
| IL_5LKS_013 | 1/L5/348:350, 1/L8/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_5LKS_247 | 1/L5/351:379, 1/L8/21:24 | No text annotation | ||
| IL_5LKS_014 | 1/L5/387:390, 1/L5/401:414 | No text annotation | geometric IL_4WF9_015 IL_44923.1 | |
| IL_5LKS_015 | 1/L5/415:421, 1/L8/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_5LKS_016 | 1/L5/443:446, 1/L5/1300:1304 | No text annotation | ||
| IL_5LKS_173 | 1/L5/457:473, 1/L5/681:699 | No text annotation | ||
| IL_5LKS_017 | 1/L5/481:487, 1/L5/669:673 | Partly complementary | geometric IL_8D29_010 IL_71154.1 | |
| IL_5LKS_248 | 1/L5/488:489, 1/L5/664:668 | No text annotation | ||
| IL_5LKS_019 | 1/L5/489:493, 1/L5/661:664 | No text annotation | ||
| IL_5LKS_249 | 1/L5/489:504, 1/L5/654:664 | No text annotation | ||
| IL_5LKS_020 | 1/L5/493:505, 1/L5/653:661 | No text annotation | ||
| IL_5LKS_250 | 1/L5/508:510, 1/L5/649:650 | Single bulged A | geometric IL_8P9A_288 IL_14190.1 | |
| IL_5LKS_175 | 1/L5/707:709, 1/L5/1287:1290 | Isolated non-canonical cWW pair | geometric IL_5ZTM_001 NA | |
| IL_5LKS_022 | 1/L5/721:724, 1/L5/942:947 | No text annotation | ||
| IL_5LKS_251 | 1/L5/725:737, 1/L5/927:941 | No text annotation | ||
| IL_5LKS_178 | 1/L5/740:752, 1/L5/911:924 | No text annotation | ||
| IL_5LKS_023 | 1/L5/1073:1076, 1/L5/1235:1239 | No text annotation | ||
| IL_5LKS_252 | 1/L5/1086:1087, 1/L5/1209:1211 | No text annotation | ||
| IL_5LKS_026 | 1/L5/1357:1360, 1/L5/1379:1382 | No text annotation | ||
| IL_5LKS_179 | 1/L5/1357:1362, 1/L5/1375:1382 | No text annotation | ||
| IL_5LKS_027 | 1/L5/1360:1362, 1/L5/1375:1379 | Isolated non-canonical cWW contact | geometric IL_5UNE_009 NA | |
| IL_5LKS_180 | 1/L5/1423:1434, 1/L5/1450:1462 | No text annotation | ||
| IL_5LKS_028 | 1/L5/1425:1429, 1/L5/1455:1460 | Triple sheared related | geometric IL_4V9F_018 IL_67427.1 | |
| IL_5LKS_029 | 1/L5/1430:1435, 1/L5/1449:1454 | No text annotation | geometric IL_8P9A_410 IL_57885.1 | |
| IL_5LKS_030 | 1/L5/1467:1469, 1/L5/1495:1498 | No text annotation | geometric IL_5E81_376 NA | |
| IL_5LKS_181 | 1/L5/1473:1476, 1/L5/1489:1491 | No text annotation | geometric IL_8P9A_292 IL_15698.4 | |
| IL_5LKS_031 | 1/L5/1474:1476, 1/L5/1489:1490 | Single base bend | geometric IL_5IBB_340 NA | |
| IL_5LKS_032 | 1/L5/1520:1522, 1/L5/1655:1657 | Isolated non-canonical cWW pair | geometric IL_5TBW_027 NA | |
| IL_5LKS_033 | 1/L5/1522:1526, 1/L5/1648:1655 | tHW-tHW cross-strand stack | homologous IL_5TBW_028 NA | |
| IL_5LKS_182 | 1/L5/1529:1538, 1/L5/1621:1645 | No text annotation | ||
| IL_5LKS_253 | 1/L5/1530:1537, 1/L5/1622:1644 | No text annotation | ||
| IL_5LKS_034 | 1/L5/1550:1551, 1/L5/1576:1578 | Single bulged G | geometric IL_4V9F_026 IL_28408.1 | |
| IL_5LKS_254 | 1/L5/1550:1557, 1/L5/1570:1578 | No text annotation | ||
| IL_5LKS_035 | 1/L5/1551:1557, 1/L5/1570:1576 | No text annotation | ||
| IL_5LKS_036 | 1/L5/1586:1589, 1/L5/1605:1607 | Major groove platform with extra cWW | geometric IL_5TBW_031 NA | |
| IL_5LKS_037 | 1/L5/1590:1592, 1/L5/1603:1604 | Single bulged U | homologous IL_5TBW_032 NA | |
| IL_5LKS_038 | 1/L5/1624:1626, 1/L5/1636:1640 | Multiple bulged bases | geometric IL_5J7L_265 NA | |
| IL_5LKS_255 | 1/L5/1671:1673, 1/L5/1682:1684 | Isolated non-canonical cWW pair | homologous IL_8P9A_262 IL_71625.1 | |
| IL_5LKS_040 | 1/L5/1686:1688, 1/L5/1848:1851 | No text annotation | ||
| IL_5LKS_256 | 1/L5/1732:1744, 1/L5/1786:1797 | No text annotation | ||
| IL_5LKS_042 | 1/L5/1858:1860, 1/L5/1874:1876 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_5LKS_185 | 1/L5/1858:1863, 1/L5/1871:1876 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.2 | |
| IL_5LKS_257 | 1/L5/1904:1909, 1/L5/2067:2072 | UAA/GAN with extra cWW | geometric IL_4WF9_104 IL_91079.1 | |
| IL_5LKS_187 | 1/L5/1911:1918, 1/L5/2064:2065 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_5LKS_044 | 1/L5/1911:1914, 1/L5/2049:2065 | No text annotation | ||
| IL_5LKS_188 | 1/L5/1918:1920, 1/L5/2063:2064 | No text annotation | ||
| IL_5LKS_189 | 1/L5/1920:1922, 1/L5/2062:2063 | No text annotation | ||
| IL_5LKS_258 | 1/L5/1926:1946, 1/L5/2036:2058 | No text annotation | ||
| IL_5LKS_045 | 1/L5/1946:1948, 1/L5/2035:2036 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_5LKS_046 | 1/L5/2083:2085, 1/L5/2272:2273 | No text annotation | ||
| IL_5LKS_047 | 1/L5/2298:2302, 1/L5/2333:2336 | Tandem non-canonical cWW pairs | geometric IL_4EYA_010 IL_15225.1 | |
| IL_5LKS_259 | 1/L5/2299:2312, 1/L5/2326:2335 | No text annotation | ||
| IL_5LKS_048 | 1/L5/2302:2309, 1/L5/2329:2333 | Kink-turn | geometric IL_5J7L_288 NA | |
| IL_5LKS_049 | 1/L5/2312:2314, 1/L5/2325:2326 | Single bulged A | geometric IL_5WWT_001 IL_14190.1 | |
| IL_5LKS_050 | 1/L5/2358:2364, 1/L5/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_5LKS_193 | 1/L5/2358:2365, 1/L5/3857:3863 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge | geometric IL_4V9F_012 IL_59724.1 | |
| IL_5LKS_260 | 1/L5/2414:2420, 1/L5/2426:2430 | No text annotation | ||
| IL_5LKS_261 | 1/L5/2451:2479, 1/L5/2499:2508 | No text annotation | ||
| IL_5LKS_051 | 1/L5/2542:2548, 1/L5/2771:2774 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_5LKS_194 | 1/L5/2549:2594, 1/L5/2751:2770 | No text annotation | ||
| IL_5LKS_262 | 1/L5/2611:2615, 1/L5/2722:2728 | No text annotation | ||
| IL_5LKS_053 | 1/L5/2646:2648, 1/L5/2685:2688 | Decoding loop related | geometric IL_2O3X_003 IL_61702.1 | |
| IL_5LKS_054 | 1/L5/2651:2653, 1/L5/2681:2682 | Single bulged G | geometric IL_3NDB_004 NA | |
| IL_5LKS_055 | 1/L5/2656:2662, 1/L5/2672:2678 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_5LKS_263 | 1/L5/2832:2838, 1/L5/3850:3853 | No text annotation | homologous IL_8P9A_302 IL_89862.1 | |
| IL_5LKS_264 | 1/L5/2844:2846, 1/L5/3842:3844 | No text annotation | homologous IL_8CRE_080 NA | |
| IL_5LKS_198 | 1/L5/2847:2850, 1/L5/3840:3841 | Major groove platform; stack outside cWW | homologous IL_8P9A_304 IL_74641.1 | |
| IL_5LKS_199 | 1/L5/2866:2872, 1/L5/2877:2884 | No text annotation | ||
| IL_5LKS_057 | 1/L5/2867:2872, 1/L5/2877:2883 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_20700.1 | |
| IL_5LKS_058 | 1/L5/2888:2891, 1/L5/3610:3613 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_15225.1 | |
| IL_5LKS_059 | 1/L5/2896:2897, 1/L5/3602:3605 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_5LKS_060 | 1/L5/3632:3633, 1/L5/3827:3829 | Single bulged A | homologous IL_5TBW_082 NA | |
| IL_5LKS_061 | 1/L5/3660:3665, 1/L5/3677:3684 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_5LKS_062 | 1/L5/3700:3703, 1/L5/3749:3750 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_5LKS_265 | 1/L5/3700:3705, 1/L5/3745:3750 | No text annotation | ||
| IL_5LKS_063 | 1/L5/3703:3706, 1/L5/3744:3749 | Major groove platform with intercalation | geometric IL_7A0S_102 NA | |
| IL_5LKS_203 | 1/L5/3708:3721, 1/L5/3732:3742 | No text annotation | ||
| IL_5LKS_266 | 1/L5/3722:3724, 1/L5/3730:3731 | Single stack bend | geometric IL_4LFB_041 IL_15011.1 | |
| IL_5LKS_064 | 1/L5/3780:3781, 1/L5/3811:3814 | Bulged stacked bases | homologous IL_5TBW_089 NA | |
| IL_5LKS_267 | 1/L5/3781:3795, 1/L5/3805:3811 | No text annotation | ||
| IL_5LKS_268 | 1/L5/3894:3899, 1/L5/4562:4566 | No text annotation | ||
| IL_5LKS_067 | 1/L5/3900:3902, 1/L5/4558:4561 | Major groove platform with intercalation | geometric IL_5TBW_092 NA | |
| IL_5LKS_068 | 1/L5/3913:3918, 1/L5/4383:4389 | No text annotation | ||
| IL_5LKS_069 | 1/L5/3926:3929, 1/L5/4181:4185 | No text annotation | ||
| IL_5LKS_269 | 1/L5/4079:4088, 1/L5/4161:4167 | No text annotation | ||
| IL_5LKS_070 | 1/L5/4081:4088, 1/L5/4161:4165 | No text annotation | ||
| IL_5LKS_071 | 1/L5/4243:4246, 1/L5/4262:4267 | No text annotation | geometric IL_3NPQ_006 IL_93503.1 | |
| IL_5LKS_270 | 1/L5/4295:4298, 1/L5/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_8P9A_327 IL_15225.1 | |
| IL_5LKS_271 | 1/L5/4347:4350, 1/L5/4364:4365 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_5LKS_074 | 1/L5/4403:4407, 1/L5/4435:4440 | No text annotation | ||
| IL_5LKS_075 | 1/L5/4412:4416, 1/L5/4426:4430 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_5LKS_076 | 1/L5/4453:4454, 1/L5/4526:4528 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_5LKS_077 | 1/L5/4456:4458, 1/L5/4520:4524 | Isolated non-canonical cWW with bulges | homologous IL_5TBW_108 NA | |
| IL_5LKS_209 | 1/L5/4456:4459, 1/L5/4517:4524 | No text annotation | ||
| IL_5LKS_078 | 1/L5/4458:4461, 1/L5/4515:4520 | No text annotation | ||
| IL_5LKS_272 | 1/L5/4466:4470, 1/L5/4485:4491 | No text annotation | ||
| IL_5LKS_079 | 1/L5/4495:4497, 1/L5/4503:4505 | Isolated non-canonical cWW pair | homologous IL_5TBW_112 NA | |
| IL_5LKS_273 | 1/L5/4534:4539, 1/L5/4546:4552 | No text annotation | geometric IL_8SSW_003 IL_82292.2 | |
| IL_5LKS_080 | 1/L5/4537:4539, 1/L5/4546:4549 | No text annotation | geometric IL_4V8Q_188 NA | |
| IL_5LKS_081 | 1/L5/4580:4582, 1/L5/4721:4723 | No text annotation | geometric IL_3ICQ_003 NA | |
| IL_5LKS_212 | 1/L5/4580:4586, 1/L5/4716:4723 | No text annotation | ||
| IL_5LKS_082 | 1/L5/4582:4586, 1/L5/4716:4721 | Double sheared with non-canonical cWW | geometric IL_5J7L_274 NA | |
| IL_5LKS_083 | 1/L5/4590:4592, 1/L5/4618:4620 | Isolated non-canonical cWW pair | homologous IL_5TBW_115 NA | |
| IL_5LKS_084 | 1/L5/4596:4603, 1/L5/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_5LKS_085 | 1/L5/4624:4629, 1/L5/4669:4673 | No text annotation | ||
| IL_5LKS_086 | 1/L5/4632:4637, 1/L5/4662:4666 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_5LKS_274 | 1/L5/4638:4640, 1/L5/4659:4661 | Isolated cWH basepair | geometric IL_4KQ0_003 NA | |
| IL_5LKS_275 | 1/L5/4641:4642, 1/L5/4655:4658 | No text annotation | homologous IL_8CRE_128 NA | |
| IL_5LKS_089 | 1/L5/4679:4685, 1/L5/4705:4711 | No text annotation | ||
| IL_5LKS_090 | 1/L5/4737:4746, 1/L5/4954:4962 | No text annotation | ||
| IL_5LKS_214 | 1/L5/4755:4765, 1/L5/4869:4878 | No text annotation | ||
| IL_5LKS_092 | 1/L5/4891:4898, 1/L5/4922:4928 | No text annotation | ||
| IL_5LKS_215 | 1/L5/4891:4901, 1/L5/4920:4928 | No text annotation | ||
| IL_5LKS_094 | 1/L5/4972:4975, 1/L5/4983:4986 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_5LKS_276 | 1/L5/4996:4997, 1/L5/5053:5055 | No text annotation | ||
| IL_5LKS_277 | 1/L5/5000:5009, 1/L5/5039:5050 | No text annotation | ||
| IL_5LKS_096 | 1/L5/5012:5017, 1/L5/5032:5036 | No text annotation | ||
| IL_5LKS_217 | 1/L5/5012:5019, 1/L5/5030:5036 | No text annotation | ||
| IL_5LKS_097 | 1/L7/15:16, 1/L7/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_5LKS_098 | 1/L7/21:27, 1/L7/52:57 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_5LKS_099 | 1/L7/28:32, 1/L7/45:51 | No text annotation | ||
| IL_5LKS_100 | 1/L7/32:36, 1/L7/41:45 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.12 | |
| IL_5LKS_101 | 1/L7/71:78, 1/L7/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_5LKS_218 | 1/L7/71:81, 1/L7/95:104 | No text annotation | ||
| IL_5LKS_102 | 1/L7/79:81, 1/L7/95:97 | Isolated non-canonical cWW pair | geometric IL_8C3A_477 NA | |
| IL_5LKS_278 | 1/L7/82:85, 1/L7/92:94 | Isolated non-canonical cWW pair | homologous IL_8P9A_370 IL_01003.1 | |
| IL_5LKS_104 | 1/L8/64:67, 1/L8/91:95 | No text annotation | ||
| IL_5LKS_105 | 1/S2/23:25, 1/S2/649:651 | Isolated non-canonical cWW pair | geometric IL_4M4O_001 NA | |
| IL_5LKS_107 | 1/S2/34:36, 1/S2/519:521 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_5LKS_221 | 1/S2/37:40, 1/S2/514:518 | Double sheared | geometric IL_5AOX_003 IL_58355.1 | |
| IL_5LKS_109 | 1/S2/41:48, 1/S2/478:481 | No text annotation | ||
| IL_5LKS_222 | 1/S2/57:62, 1/S2/86:88 | No text annotation | homologous IL_8P9A_378 IL_61299.5 | |
| IL_5LKS_111 | 1/S2/63:69, 1/S2/80:85 | No text annotation | geometric IL_3BBM_001 IL_47352.1 | |
| IL_5LKS_112 | 1/S2/108:112, 1/S2/349:353 | Triple non-canonical cWW pairs | geometric IL_8VMB_003 NA | |
| IL_5LKS_113 | 1/S2/112:116, 1/S2/347:349 | Multiple bulged bases, near cWW | geometric IL_5M0H_002 NA | |
| IL_5LKS_114 | 1/S2/116:122, 1/S2/342:347 | No text annotation | ||
| IL_5LKS_115 | 1/S2/145:152, 1/S2/166:174 | No text annotation | ||
| IL_5LKS_116 | 1/S2/152:155, 1/S2/163:166 | Tandem non-canonical cWW pairs | geometric IL_4K27_001 NA | |
| IL_5LKS_117 | 1/S2/317:320, 1/S2/331:333 | No text annotation | ||
| IL_5LKS_118 | 1/S2/358:364, 1/S2/396:404 | No text annotation | ||
| IL_5LKS_279 | 1/S2/366:371, 1/S2/393:394 | No text annotation | homologous IL_8P9A_392 IL_01372.1 | |
| IL_5LKS_120 | 1/S2/411:413, 1/S2/424:429 | No text annotation | homologous IL_4V88_404 NA | |
| IL_5LKS_121 | 1/S2/437:439, 1/S2/454:456 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_5LKS_122 | 1/S2/487:489, 1/S2/511:512 | Single bulged U | homologous IL_4V88_407 NA | |
| IL_5LKS_123 | 1/S2/491:496, 1/S2/506:509 | C-loop with extra cWW pair | geometric IL_4V88_408 NA | |
| IL_5LKS_225 | 1/S2/528:534, 1/S2/549:557 | No text annotation | ||
| IL_5LKS_125 | 1/S2/599:609, 1/S2/634:637 | No text annotation | ||
| IL_5LKS_226 | 1/S2/609:617, 1/S2/624:634 | No text annotation | ||
| IL_5LKS_126 | 1/S2/663:665, 1/S2/1162:1164 | No text annotation | geometric IL_3ICQ_003 NA | |
| IL_5LKS_280 | 1/S2/676:680, 1/S2/1025:1029 | tSH-tHW-tHS | homologous IL_8CRE_426 IL_05821.1 | |
| IL_5LKS_128 | 1/S2/802:803, 1/S2/860:863 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_5LKS_129 | 1/S2/805:807, 1/S2/856:858 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_5LKS_130 | 1/S2/807:816, 1/S2/848:856 | No text annotation | ||
| IL_5LKS_228 | 1/S2/807:832, 1/S2/842:856 | No text annotation | ||
| IL_5LKS_131 | 1/S2/923:927, 1/S2/1014:1019 | Partly complementary | geometric IL_6CZR_167 NA | |
| IL_5LKS_229 | 1/S2/928:931, 1/S2/1010:1013 | Tandem non-canonical cWW pairs | homologous IL_8P9A_419 IL_15225.1 | |
| IL_5LKS_133 | 1/S2/931:937, 1/S2/1005:1010 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.2 | |
| IL_5LKS_230 | 1/S2/938:941, 1/S2/985:1004 | No text annotation | ||
| IL_5LKS_281 | 1/S2/942:945, 1/S2/981:984 | Tandem non-canonical cWW pairs | homologous IL_8P9A_421 IL_15225.1 | |
| IL_5LKS_135 | 1/S2/952:956, 1/S2/967:974 | Kink-turn | homologous IL_4V88_434 NA | |
| IL_5LKS_282 | 1/S2/1042:1047, 1/S2/1071:1073 | No text annotation | homologous IL_8P9A_423 IL_31359.1 | |
| IL_5LKS_137 | 1/S2/1047:1051, 1/S2/1067:1071 | tSH-tHW-tHS | geometric IL_5J7L_037 NA | |
| IL_5LKS_138 | 1/S2/1096:1104, 1/S2/1128:1136 | No text annotation | ||
| IL_5LKS_283 | 1/S2/1108:1110, 1/S2/1123:1124 | Minor groove platform | geometric IL_4UYK_001 IL_34520.1 | |
| IL_5LKS_140 | 1/S2/1168:1175, 1/S2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_5LKS_141 | 1/S2/1203:1205, 1/S2/1693:1696 | No text annotation | ||
| IL_5LKS_142 | 1/S2/1206:1208, 1/S2/1691:1692 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_5LKS_284 | 1/S2/1214:1217, 1/S2/1681:1685 | C-loop | homologous IL_8P9A_431 IL_63596.12 | |
| IL_5LKS_144 | 1/S2/1232:1236, 1/S2/1521:1526 | No text annotation | ||
| IL_5LKS_145 | 1/S2/1328:1333, 1/S2/1498:1501 | Tandem non-canonical cWW pairs | geometric IL_4V88_473 NA | |
| IL_5LKS_285 | 1/S2/1333:1335, 1/S2/1492:1498 | No text annotation | homologous IL_8P9A_440 IL_93811.1 | |
| IL_5LKS_147 | 1/S2/1337:1338, 1/S2/1488:1490 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_5LKS_148 | 1/S2/1347:1349, 1/S2/1380:1382 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_5LKS_234 | 1/S2/1350:1363, 1/S2/1375:1379 | No text annotation | ||
| IL_5LKS_149 | 1/S2/1363:1365, 1/S2/1374:1375 | Minor groove platform | homologous IL_4V88_454 NA | |
| IL_5LKS_150 | 1/S2/1395:1399, 1/S2/1447:1450 | No text annotation | ||
| IL_5LKS_235 | 1/S2/1395:1401, 1/S2/1445:1450 | No text annotation | ||
| IL_5LKS_286 | 1/S2/1537:1550, 1/S2/1583:1596 | No text annotation | ||
| IL_5LKS_151 | 1/S2/1550:1558, 1/S2/1577:1583 | No text annotation | ||
| IL_5LKS_287 | 1/S2/1550:1562, 1/S2/1573:1583 | No text annotation | ||
| IL_5LKS_152 | 1/S2/1559:1563, 1/S2/1572:1576 | Partly complementary | geometric IL_7VYX_008 IL_71154.1 | |
| IL_5LKS_153 | 1/S2/1604:1611, 1/S2/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_5LKS_154 | 1/S2/1611:1612, 1/S2/1627:1629 | Single stack bend | geometric IL_5TBW_009 NA | |
| IL_5LKS_155 | 1/S2/1705:1708, 1/S2/1826:1829 | Tandem non-canonical cWW pairs | geometric IL_5EW4_002 IL_71194.1 | |
| IL_5LKS_288 | 1/S2/1705:1711, 1/S2/1822:1829 | No text annotation | ||
| IL_5LKS_156 | 1/S2/1708:1713, 1/S2/1820:1826 | No text annotation | ||
| IL_5LKS_157 | 1/S2/1713:1717, 1/S2/1816:1820 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_5LKS_289 | 1/S2/1714:1723, 1/S2/1811:1819 | No text annotation | ||
| IL_5LKS_158 | 1/S2/1717:1723, 1/S2/1811:1816 | No text annotation | ||
| IL_5LKS_290 | 1/S2/1729:1731, 1/S2/1803:1805 | Isolated non-canonical cWW pair | homologous IL_8CRE_473 IL_71625.1 | |
| IL_5LKS_160 | 1/S2/1733:1736, 1/S2/1798:1801 | Double sheared | homologous IL_4V88_471 NA | |
| IL_5LKS_291 | 1/S2/1739:1741, 1/S2/1793:1795 | Isolated non-canonical cWW pair | geometric IL_7A0S_107 IL_71625.1 | |
| IL_5LKS_162 | 1/S2/1742:1748, 1/S2/1786:1792 | No text annotation | ||
| IL_5LKS_164 | 1/S2/1751:1752, 1/S2/1780:1782 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5LKS_001 | Partly complementary | ||
| IL_5LKS_165 | No text annotation | ||
| IL_5LKS_002 | Isolated non-canonical cWW pair | ||
| IL_5LKS_166 | No text annotation | ||
| IL_5LKS_167 | No text annotation | ||
| IL_5LKS_006 | No text annotation | ||
| IL_5LKS_168 | No text annotation | ||
| IL_5LKS_169 | Isolated non-canonical cWW pair | ||
| IL_5LKS_012 | No text annotation | ||
| IL_5LKS_170 | No text annotation | ||
| IL_5LKS_171 | No text annotation | ||
| IL_5LKS_172 | No text annotation | ||
| IL_5LKS_018 | No text annotation | ||
| IL_5LKS_174 | No text annotation | ||
| IL_5LKS_021 | Tandem non-canonical cWW pairs | ||
| IL_5LKS_176 | No text annotation | ||
| IL_5LKS_177 | No text annotation | ||
| IL_5LKS_024 | No text annotation | ||
| IL_5LKS_025 | Isolated non-canonical cWW pair | ||
| IL_5LKS_183 | No text annotation | ||
| IL_5LKS_039 | Tandem non-canonical cWW pairs | ||
| IL_5LKS_041 | No text annotation | ||
| IL_5LKS_184 | No text annotation | ||
| IL_5LKS_186 | No text annotation | ||
| IL_5LKS_043 | No text annotation | ||
| IL_5LKS_190 | No text annotation | ||
| IL_5LKS_191 | Isolated non-canonical cWW pair | ||
| IL_5LKS_192 | No text annotation | ||
| IL_5LKS_052 | No text annotation | ||
| IL_5LKS_195 | No text annotation | ||
| IL_5LKS_196 | No text annotation | ||
| IL_5LKS_056 | No text annotation | ||
| IL_5LKS_197 | No text annotation | ||
| IL_5LKS_200 | No text annotation | ||
| IL_5LKS_201 | No text annotation | ||
| IL_5LKS_202 | No text annotation | ||
| IL_5LKS_065 | No text annotation | ||
| IL_5LKS_204 | No text annotation | ||
| IL_5LKS_066 | No text annotation | ||
| IL_5LKS_205 | No text annotation | ||
| IL_5LKS_206 | No text annotation | ||
| IL_5LKS_207 | No text annotation | ||
| IL_5LKS_072 | No text annotation | ||
| IL_5LKS_208 | No text annotation | ||
| IL_5LKS_073 | No text annotation | ||
| IL_5LKS_210 | No text annotation | ||
| IL_5LKS_211 | No text annotation | ||
| IL_5LKS_213 | No text annotation | ||
| IL_5LKS_087 | Tandem non-canonical cWW pairs | ||
| IL_5LKS_088 | Isolated non-canonical cWW pair | ||
| IL_5LKS_091 | No text annotation | ||
| IL_5LKS_093 | No text annotation | ||
| IL_5LKS_095 | Isolated non-canonical cWW pair | ||
| IL_5LKS_216 | No text annotation | ||
| IL_5LKS_103 | Tandem non-canonical cWW pairs | ||
| IL_5LKS_219 | Partly complementary | ||
| IL_5LKS_220 | Tandem non-canonical cWW pairs | ||
| IL_5LKS_106 | Isolated non-canonical cWW pair | ||
| IL_5LKS_108 | Triple sheared related | ||
| IL_5LKS_110 | No text annotation | ||
| IL_5LKS_119 | No text annotation | ||
| IL_5LKS_223 | No text annotation | ||
| IL_5LKS_224 | Isolated non-canonical cWW pair | ||
| IL_5LKS_124 | No text annotation | ||
| IL_5LKS_227 | No text annotation | ||
| IL_5LKS_127 | No text annotation | ||
| IL_5LKS_132 | No text annotation | ||
| IL_5LKS_134 | No text annotation | ||
| IL_5LKS_231 | No text annotation | ||
| IL_5LKS_136 | No text annotation | ||
| IL_5LKS_139 | Isolated non-canonical cWW with bulges | ||
| IL_5LKS_232 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_5LKS_143 | No text annotation | ||
| IL_5LKS_146 | No text annotation | ||
| IL_5LKS_233 | Isolated non-canonical cWW pair | ||
| IL_5LKS_236 | No text annotation | ||
| IL_5LKS_237 | No text annotation | ||
| IL_5LKS_238 | No text annotation | ||
| IL_5LKS_239 | No text annotation | ||
| IL_5LKS_240 | No text annotation | ||
| IL_5LKS_159 | Triple non-canonical cWW pairs | ||
| IL_5LKS_241 | No text annotation | ||
| IL_5LKS_161 | Tandem non-canonical cWW pairs | ||
| IL_5LKS_163 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5LKS_001 | 1/L5/379:387, 1/L5/414:415, 1/L8/19:21 | No text annotation | ||
| J3_5LKS_043 | 1/L5/380:390, 1/L5/401:415, 1/L8/19:20 | No text annotation | homologous J3_8P9A_047 J3_17917.1 | |
| J3_5LKS_044 | 1/L5/448:456, 1/L5/700:704, 1/L5/1293:1298 | No text annotation | ||
| J3_5LKS_003 | 1/L5/978:983, 1/L5/1070:1073, 1/L5/1239:1276 | No text annotation | ||
| J3_5LKS_045 | 1/L5/1530:1537, 1/L5/1622:1624, 1/L5/1640:1644 | No text annotation | ||
| J3_5LKS_046 | 1/L5/1541:1548, 1/L5/1580:1592, 1/L5/1603:1618 | No text annotation | ||
| J3_5LKS_005 | 1/L5/1545:1549, 1/L5/1579:1586, 1/L5/1607:1614 | No text annotation | ||
| J3_5LKS_047 | 1/L5/1726:1727, 1/L5/1802:1809, 1/L5/1829:1836 | No text annotation | ||
| J3_5LKS_026 | 1/L5/2393:2400, 1/L5/2804:2807, 1/L5/2819:2822 | No text annotation | homologous J3_8P9A_053 J3_05025.1 | |
| J3_5LKS_007 | 1/L5/2402:2405, 1/L5/2785:2791, 1/L5/2800:2802 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_5LKS_048 | 1/L5/2406:2410, 1/L5/2434:2441, 1/L5/2781:2784 | No text annotation | ||
| J3_5LKS_049 | 1/L5/2598:2602, 1/L5/2737:2738, 1/L5/2742:2747 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_5LKS_009 | 1/L5/2844:2855, 1/L5/3837:3839, 1/L5/3843:3844 | No text annotation | ||
| J3_5LKS_010 | 1/L5/3696:3698, 1/L5/3752:3780, 1/L5/3814:3819 | No text annotation | ||
| J3_5LKS_011 | 1/L5/3937:3939, 1/L5/4074:4078, 1/L5/4168:4173 | No text annotation | geometric J3_9DFE_014 J3_17460.1 | |
| J3_5LKS_030 | 1/L5/3937:3946, 1/L5/4067:4078, 1/L5/4168:4173 | No text annotation | ||
| J3_5LKS_031 | 1/L5/4091:4097, 1/L5/4112:4129, 1/L5/4155:4158 | No text annotation | ||
| J3_5LKS_050 | 1/L5/4228:4230, 1/L5/4331:4342, 1/L5/4370:4375 | No text annotation | homologous J3_8CRE_021 NA | |
| J3_5LKS_012 | 1/L5/4241:4243, 1/L5/4267:4269, 1/L5/4278:4283 | No text annotation | homologous J3_8P9A_062 J3_05327.1 | |
| J3_5LKS_033 | 1/L5/4459:4466, 1/L5/4491:4494, 1/L5/4506:4517 | No text annotation | ||
| J3_5LKS_034 | 1/L5/4969:4975, 1/L5/4983:4994, 1/L5/5057:5064 | No text annotation | ||
| J3_5LKS_013 | 1/L5/4970:4972, 1/L5/4986:4994, 1/L5/5057:5063 | No text annotation | ||
| J3_5LKS_014 | 1/L7/9:14, 1/L7/65:68, 1/L7/107:110 | No text annotation | ||
| J3_5LKS_051 | 1/L7/9:16, 1/L7/62:66, 1/L7/109:110 | No text annotation | ||
| J3_5LKS_015 | 1/L8/43:45, 1/L8/58:64, 1/L8/95:100 | No text annotation | ||
| J3_5LKS_052 | 1/L8/44:45, 1/L8/58:66, 1/L8/92:99 | No text annotation | ||
| J3_5LKS_016 | 1/S2/40:41, 1/S2/481:487, 1/S2/512:514 | No text annotation | geometric J3_4V88_078 NA | |
| J3_5LKS_037 | 1/S2/40:47, 1/S2/479:487, 1/S2/512:514 | No text annotation | homologous J3_8P9A_069 J3_63856.1 | |
| J3_5LKS_053 | 1/S2/682:685, 1/S2/917:927, 1/S2/1014:1023 | No text annotation | ||
| J3_5LKS_017 | 1/S2/938:941, 1/S2/985:993, 1/S2/1000:1004 | No text annotation | homologous J3_8P9A_074 J3_23895.1 | |
| J3_5LKS_054 | 1/S2/1090:1103, 1/S2/1129:1140, 1/S2/1147:1159 | No text annotation | ||
| J3_5LKS_018 | 1/S2/1091:1096, 1/S2/1136:1141, 1/S2/1146:1158 | No text annotation | ||
| J3_5LKS_055 | 1/S2/1218:1221, 1/S2/1645:1651, 1/S2/1673:1680 | No text annotation | ||
| J3_5LKS_019 | 1/S2/1222:1232, 1/S2/1526:1532, 1/S2/1638:1644 | No text annotation | ||
| J3_5LKS_056 | 1/S2/1237:1244, 1/S2/1255:1266, 1/S2/1516:1520 | No text annotation | homologous J3_8CRE_080 J3_88451.1 | |
| J3_5LKS_057 | 1/S2/1267:1281, 1/S2/1316:1327, 1/S2/1502:1515 | No text annotation | ||
| J3_5LKS_058 | 1/S2/1339:1345, 1/S2/1384:1390, 1/S2/1480:1487 | No text annotation | ||
| J3_5LKS_021 | 1/S2/1350:1351, 1/S2/1360:1363, 1/S2/1375:1379 | No text annotation | homologous J3_8P9A_081 J3_76043.4 | |
| J3_5LKS_059 | 1/S2/1390:1395, 1/S2/1450:1456, 1/S2/1470:1480 | No text annotation | ||
| J4_5LKS_019 | 1/L5/196:203, 1/L5/212:222, 1/L5/226:228, 1/L5/240:244 | No text annotation | ||
| J4_5LKS_020 | 1/L5/711:713, 1/L5/955:983, 1/L5/1070:1076, 1/L5/1235:1285 | No text annotation | ||
| J4_5LKS_021 | 1/L5/2365:2371, 1/L5/2389:2391, 1/L5/2824:2829, 1/L5/3856:3857 | No text annotation | ||
| J4_5LKS_022 | 1/L5/2443:2451, 1/L5/2508:2519, 1/L5/2536:2539, 1/L5/2777:2779 | No text annotation | ||
| J4_5LKS_023 | 1/L5/2618:2619, 1/L5/2637:2642, 1/L5/2692:2698, 1/L5/2718:2719 | No text annotation | ||
| J4_5LKS_024 | 1/L5/2847:2863, 1/L5/2887:2891, 1/L5/3610:3626, 1/L5/3835:3841 | No text annotation | ||
| J4_5LKS_025 | 1/L5/2850:2863, 1/L5/2887:2891, 1/L5/3610:3626, 1/L5/3835:3840 | No text annotation | ||
| J4_5LKS_026 | 1/L5/3634:3638, 1/L5/3650:3656, 1/L5/3688:3694, 1/L5/3821:3826 | No text annotation | ||
| J4_5LKS_027 | 1/L5/3920:3924, 1/L5/4187:4207, 1/L5/4225:4228, 1/L5/4375:4381 | No text annotation | ||
| J4_5LKS_028 | 1/L5/4231:4238, 1/L5/4286:4294, 1/L5/4316:4319, 1/L5/4328:4330 | No text annotation | ||
| J4_5LKS_011 | 1/L5/4587:4590, 1/L5/4620:4621, 1/L5/4676:4685, 1/L5/4705:4715 | No text annotation | ||
| J4_5LKS_012 | 1/S2/30:34, 1/S2/521:527, 1/S2/558:595, 1/S2/641:644 | No text annotation | ||
| J4_5LKS_029 | 1/S2/49:57, 1/S2/88:96, 1/S2/434:436, 1/S2/457:477 | No text annotation | ||
| J4_5LKS_030 | 1/S2/96:106, 1/S2/355:366, 1/S2/394:409, 1/S2/431:434 | No text annotation | ||
| J4_5LKS_031 | 1/S2/112:144, 1/S2/175:219, 1/S2/302:314, 1/S2/336:349 | No text annotation | ||
| J4_5LKS_016 | 1/S2/665:676, 1/S2/1029:1037, 1/S2/1078:1089, 1/S2/1160:1162 | No text annotation | ||
| J4_5LKS_017 | 1/S2/1223:1236, 1/S2/1521:1536, 1/S2/1597:1604, 1/S2/1635:1643 | No text annotation | ||
| J4_5LKS_018 | 1/S2/1339:1345, 1/S2/1384:1395, 1/S2/1450:1456, 1/S2/1470:1487 | No text annotation | ||
| J5_5LKS_005 | 1/L5/19:21, 1/L8/35:42, 1/L8/101:106, 1/L8/113:114, 1/L8/136:138 | No text annotation | homologous J5_8P9A_010 J5_27223.1 | |
| J5_5LKS_006 | 1/L5/1335:1340, 1/L5/1516:1522, 1/L5/1655:1661, 1/L5/2288:2292, 1/L5/2342:2351 | No text annotation | ||
| J5_5LKS_007 | 1/L5/3903:3910, 1/L5/4392:4407, 1/L5/4435:4453, 1/L5/4528:4534, 1/L5/4552:4557 | No text annotation | ||
| J5_5LKS_004 | 1/L5/3919:3924, 1/L5/4187:4207, 1/L5/4225:4231, 1/L5/4330:4342, 1/L5/4370:4382 | No text annotation | ||
| J5_5LKS_008 | 1/L5/3920:3924, 1/L5/4187:4207, 1/L5/4225:4230, 1/L5/4331:4342, 1/L5/4370:4381 | No text annotation | ||
| J6_5LKS_003 | 1/L5/1352:1355, 1/L5/1384:1388, 1/L5/1395:1401, 1/L5/1416:1421, 1/L5/1464:1467, 1/L5/1498:1504 | No text annotation | ||
| J6_5LKS_004 | 1/L5/1666:1671, 1/L5/1684:1685, 1/L5/1852:1855, 1/L5/1879:1899, 1/L5/2077:2078, 1/L5/2278:2283 | No text annotation | ||
| J8_5LKS_002 | 1/L5/21:26, 1/L5/57:78, 1/L5/105:118, 1/L5/153:160, 1/L5/275:283, 1/L5/304:312, 1/L5/325:339, 1/L8/33:35 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5LKS_022 | No text annotation | ||
| J3_5LKS_002 | No text annotation | ||
| J3_5LKS_004 | No text annotation | ||
| J3_5LKS_023 | No text annotation | ||
| J3_5LKS_024 | No text annotation | ||
| J3_5LKS_025 | No text annotation | ||
| J3_5LKS_006 | No text annotation | ||
| J3_5LKS_027 | No text annotation | ||
| J3_5LKS_028 | No text annotation | ||
| J3_5LKS_008 | No text annotation | ||
| J3_5LKS_029 | No text annotation | ||
| J3_5LKS_032 | No text annotation | ||
| J3_5LKS_035 | No text annotation | ||
| J3_5LKS_036 | No text annotation | ||
| J3_5LKS_038 | No text annotation | ||
| J3_5LKS_039 | No text annotation | ||
| J3_5LKS_040 | No text annotation | ||
| J3_5LKS_020 | No text annotation | ||
| J3_5LKS_041 | No text annotation | ||
| J3_5LKS_042 | No text annotation | ||
| J4_5LKS_001 | No text annotation | ||
| J4_5LKS_002 | No text annotation | ||
| J4_5LKS_003 | No text annotation | ||
| J4_5LKS_004 | No text annotation | ||
| J4_5LKS_005 | No text annotation | ||
| J4_5LKS_006 | No text annotation | ||
| J4_5LKS_007 | No text annotation | ||
| J4_5LKS_008 | No text annotation | ||
| J4_5LKS_009 | No text annotation | ||
| J4_5LKS_010 | No text annotation | ||
| J4_5LKS_013 | No text annotation | ||
| J4_5LKS_014 | No text annotation | ||
| J4_5LKS_015 | No text annotation | ||
| J5_5LKS_001 | No text annotation | ||
| J5_5LKS_002 | No text annotation | ||
| J5_5LKS_003 | No text annotation | ||
| J6_5LKS_001 | No text annotation | ||
| J6_5LKS_002 | No text annotation | ||
| J8_5LKS_001 | No text annotation |
Coloring options: