HL_5LKS_009

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUAAACUCC

Length

10 nucleotides

Bulged bases

5LKS|1|L5|G|315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LKS_009 not in the Motif Atlas

Geometric match to HL_5TBW_009

Geometric discrepancy: 0.3116

The information below is about HL_5TBW_009

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_15076.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5LKS|1|L5|G|314
5LKS|1|L5|G|315
5LKS|1|L5|U|316
5LKS|1|L5|A|317
5LKS|1|L5|A|318
5LKS|1|L5|A|319
5LKS|1|L5|C|320
5LKS|1|L5|U|321
5LKS|1|L5|C|322
5LKS|1|L5|C|323

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LN

60S ribosomal protein L15

Chain La

60S ribosomal protein L27a

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a