HL_5LKS_020

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCCUCUCCAGUCCGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LKS_020 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.326

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

5LKS|1|L5|G|1435
5LKS|1|L5|C|1436
5LKS|1|L5|C|1437
5LKS|1|L5|U|1438
5LKS|1|L5|C|1439
5LKS|1|L5|U|1440
5LKS|1|L5|C|1441
5LKS|1|L5|C|1442
5LKS|1|L5|A|1443
5LKS|1|L5|G|1444
5LKS|1|L5|U|1445
5LKS|1|L5|C|1446
5LKS|1|L5|C|1447
5LKS|1|L5|G|1448
5LKS|1|L5|C|1449

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7

Chain LQ

60S ribosomal protein L18