HL_5LKS_036

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGCGAUGGCCUCCGUUGCCC

Length

21 nucleotides

Bulged bases

5LKS|1|L5|C|2488, 5LKS|1|L5|C|2489, 5LKS|1|L5|U|2490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|L5|G|2479
5LKS|1|L5|G|2480
5LKS|1|L5|G|2481
5LKS|1|L5|C|2482
5LKS|1|L5|G|2483
5LKS|1|L5|A|2484
5LKS|1|L5|U|2485
5LKS|1|L5|G|2486
5LKS|1|L5|G|2487
5LKS|1|L5|C|2488
5LKS|1|L5|C|2489
5LKS|1|L5|U|2490
5LKS|1|L5|C|2491
5LKS|1|L5|C|2492
5LKS|1|L5|G|2493
5LKS|1|L5|U|2494
5LKS|1|L5|U|2495
5LKS|1|L5|G|2496
5LKS|1|L5|C|2497
5LKS|1|L5|C|2498
5LKS|1|L5|C|2499

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LX

60S ribosomal protein L23a