HL_5LKS_046

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGGGUCGGUCGCGGCCGGCGCCUAGCAG

Length

29 nucleotides

Bulged bases

5LKS|1|L5|G|2903, 5LKS|1|L5|G|2910, 5LKS|1|L5|A|3596

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|L5|C|2899
5LKS|1|L5|U|2900
5LKS|1|L5|G|2901
5LKS|1|L5|G|2902
5LKS|1|L5|G|2903
5LKS|1|L5|U|2904
5LKS|1|L5|C|2905
5LKS|1|L5|G|2906
5LKS|1|L5|G|2907
5LKS|1|L5|U|2908
5LKS|1|L5|C|2909
5LKS|1|L5|G|2910
5LKS|1|L5|C|3584
5LKS|1|L5|G|3585
5LKS|1|L5|G|3586
5LKS|1|L5|C|3587
5LKS|1|L5|C|3588
5LKS|1|L5|G|3589
5LKS|1|L5|G|3590
5LKS|1|L5|C|3591
5LKS|1|L5|G|3592
5LKS|1|L5|C|3593
5LKS|1|L5|C|3594
5LKS|1|L5|U|3595
5LKS|1|L5|A|3596
5LKS|1|L5|G|3597
5LKS|1|L5|C|3598
5LKS|1|L5|A|3599
5LKS|1|L5|G|3600

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11