Loop HL_5LKS

3D structure

PDB id: 5LKS (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure-function insights reveal the human ribosome as a cancer target for antibiotics
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å

Loop

Sequence: GACAUGAGAGGUGUAGAAUAAGUGGGAGGCCCGGGCCGCCGGUGAAAUACCACUACUCUGAUCGUUGGGCGGGGUCCGCCGGCCCUGCGGGCCGCCGGUGAAAUACCACUACUCUGAUCGU*U
Length: 122 nucleotides
Bulged bases: 5LKS|1|L5|A|3947, 5LKS|1|L5|U|3959, 5LKS|1|L5|A|3962, 5LKS|1|L5|G|4035, 5LKS|1|L5|G|4042, 5LKS|1|L5|U|4044, 5LKS|1|L5|G|4012, 5LKS|1|L5|G|4013, 5LKS|1|L5|G|4014, 5LKS|1|L5|C|4015, 5LKS|1|L5|G|4016, 5LKS|1|L5|G|4017, 5LKS|1|L5|G|4018, 5LKS|1|L5|G|4019, 5LKS|1|L5|U|4020, 5LKS|1|L5|C|4021, 5LKS|1|L5|C|4022, 5LKS|1|L5|G|4023, 5LKS|1|L5|C|4024, 5LKS|1|L5|C|4025, 5LKS|1|L5|G|4026, 5LKS|1|L5|G|4027, 5LKS|1|L5|C|4028, 5LKS|1|L5|C|4029, 5LKS|1|L5|C|4030, 5LKS|1|L5|U|4031, 5LKS|1|L5|G|4032, 5LKS|1|L5|C|4033, 5LKS|1|L5|G|4034, 5LKS|1|L5|G|4035, 5LKS|1|L5|C|4038, 5LKS|1|L5|G|4042, 5LKS|1|L5|G|4043, 5LKS|1|L5|U|4044, 5LKS|1|L5|G|4045, 5LKS|1|L5|A|4047, 5LKS|1|L5|U|4049, 5LKS|1|L5|C|4051, 5LKS|1|L5|A|4053, 5LKS|1|L5|C|4054, 5LKS|1|L5|U|4058, 5LKS|1|L5|C|4059, 5LKS|1|L5|U|4063, 5LKS|1|L5|C|4064
QA status: Missing nucleotides

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5LKS|1|L5|G|3946
5LKS|1|L5|A|3947
5LKS|1|L5|C|3948
5LKS|1|L5|A|3949
5LKS|1|L5|U|3950
5LKS|1|L5|G|3951
5LKS|1|L5|A|3952
5LKS|1|L5|G|3953
5LKS|1|L5|A|3954
5LKS|1|L5|G|3955
5LKS|1|L5|G|3956
5LKS|1|L5|U|3957
5LKS|1|L5|G|3958
5LKS|1|L5|U|3959
5LKS|1|L5|A|3960
5LKS|1|L5|G|3961
5LKS|1|L5|A|3962
5LKS|1|L5|A|3963
5LKS|1|L5|U|3964
5LKS|1|L5|A|3965
5LKS|1|L5|A|3966
5LKS|1|L5|G|3967
5LKS|1|L5|U|3968
5LKS|1|L5|G|3969
5LKS|1|L5|G|3970
5LKS|1|L5|G|3971
5LKS|1|L5|A|3972
5LKS|1|L5|G|3973
5LKS|1|L5|G|3974
5LKS|1|L5|C|3975
5LKS|1|L5|C|3976
5LKS|1|L5|C|3977
5LKS|1|L5|G|4034
5LKS|1|L5|G|4035
5LKS|1|L5|G|4036
5LKS|1|L5|C|4037
5LKS|1|L5|C|4038
5LKS|1|L5|G|4039
5LKS|1|L5|C|4040
5LKS|1|L5|C|4041
5LKS|1|L5|G|4042
5LKS|1|L5|G|4043
5LKS|1|L5|U|4044
5LKS|1|L5|G|4045
5LKS|1|L5|A|4046
5LKS|1|L5|A|4047
5LKS|1|L5|A|4048
5LKS|1|L5|U|4049
5LKS|1|L5|A|4050
5LKS|1|L5|C|4051
5LKS|1|L5|C|4052
5LKS|1|L5|A|4053
5LKS|1|L5|C|4054
5LKS|1|L5|U|4055
5LKS|1|L5|A|4056
5LKS|1|L5|C|4057
5LKS|1|L5|U|4058
5LKS|1|L5|C|4059
5LKS|1|L5|U|4060
5LKS|1|L5|G|4061
5LKS|1|L5|A|4062
5LKS|1|L5|U|4063
5LKS|1|L5|C|4064
5LKS|1|L5|G|4065
5LKS|1|L5|U|4066
5LKS|1|L5|U|4067
5LKS|1|L5|G|4012
5LKS|1|L5|G|4013
5LKS|1|L5|G|4014
5LKS|1|L5|C|4015
5LKS|1|L5|G|4016
5LKS|1|L5|G|4017
5LKS|1|L5|G|4018
5LKS|1|L5|G|4019
5LKS|1|L5|U|4020
5LKS|1|L5|C|4021
5LKS|1|L5|C|4022
5LKS|1|L5|G|4023
5LKS|1|L5|C|4024
5LKS|1|L5|C|4025
5LKS|1|L5|G|4026
5LKS|1|L5|G|4027
5LKS|1|L5|C|4028
5LKS|1|L5|C|4029
5LKS|1|L5|C|4030
5LKS|1|L5|U|4031
5LKS|1|L5|G|4032
5LKS|1|L5|C|4033
5LKS|1|L5|G|4034
5LKS|1|L5|G|4035
5LKS|1|L5|G|4036
5LKS|1|L5|C|4037
5LKS|1|L5|C|4038
5LKS|1|L5|G|4039
5LKS|1|L5|C|4040
5LKS|1|L5|C|4041
5LKS|1|L5|G|4042
5LKS|1|L5|G|4043
5LKS|1|L5|U|4044
5LKS|1|L5|G|4045
5LKS|1|L5|A|4046
5LKS|1|L5|A|4047
5LKS|1|L5|A|4048
5LKS|1|L5|U|4049
5LKS|1|L5|A|4050
5LKS|1|L5|C|4051
5LKS|1|L5|C|4052
5LKS|1|L5|A|4053
5LKS|1|L5|C|4054
5LKS|1|L5|U|4055
5LKS|1|L5|A|4056
5LKS|1|L5|C|4057
5LKS|1|L5|U|4058
5LKS|1|L5|C|4059
5LKS|1|L5|U|4060
5LKS|1|L5|G|4061
5LKS|1|L5|A|4062
5LKS|1|L5|U|4063
5LKS|1|L5|C|4064
5LKS|1|L5|G|4065
5LKS|1|L5|U|4066
*
5LKS|1|L5|U|4067

Current chains

Chain L5: 28S ribosomal RNA

Nearby chains

Chain Li: 60S ribosomal protein L36
Chain Lz: 60S ribosomal protein L10a
Chain SB: 40S ribosomal protein S3a

HL_5LKS_053