3D structure

PDB id
5LKS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure-function insights reveal the human ribosome as a cancer target for antibiotics
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CGAGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5LKS_067 not in the Motif Atlas
Homologous match to HL_8C3A_066
Geometric discrepancy: 0.2525
The information below is about HL_8C3A_066
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

5LKS|1|L5|C|4603
5LKS|1|L5|G|4604
5LKS|1|L5|A|4605
5LKS|1|L5|G|4606
5LKS|1|L5|A|4607
5LKS|1|L5|G|4608

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LH
60S ribosomal protein L9
Chain Lm
Ubiquitin-60S ribosomal protein L40

Coloring options:


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