HL_5LKS_072

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

5LKS|1|L5|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LKS_072 not in the Motif Atlas

Homologous match to HL_5TBW_070

Geometric discrepancy: 0.2472

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

5LKS|1|L5|G|4975
5LKS|1|L5|U|4976
5LKS|1|L5|A|4977
5LKS|1|L5|G|4978
5LKS|1|L5|A|4979
5LKS|1|L5|C|4980
5LKS|1|L5|G|4981
5LKS|1|L5|A|4982
5LKS|1|L5|C|4983

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17