HL_5LKS_113

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGUGUGAGGCCG

Length

13 nucleotides

Bulged bases

5LKS|1|L5|G|232, 5LKS|1|L5|U|233, 5LKS|1|L5|G|234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|L5|C|228
5LKS|1|L5|G|229
5LKS|1|L5|G|230
5LKS|1|L5|U|231
5LKS|1|L5|G|232
5LKS|1|L5|U|233
5LKS|1|L5|G|234
5LKS|1|L5|A|235
5LKS|1|L5|G|236
5LKS|1|L5|G|237
5LKS|1|L5|C|238
5LKS|1|L5|C|239
5LKS|1|L5|G|240

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26