HL_5LKS_115
3D structure
- PDB id
- 5LKS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure-function insights reveal the human ribosome as a cancer target for antibiotics
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAGGAAACUC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LKS_115 not in the Motif Atlas
- Geometric match to HL_8KAL_008
- Geometric discrepancy: 0.356
- The information below is about HL_8KAL_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
5LKS|1|L5|G|1559
5LKS|1|L5|A|1560
5LKS|1|L5|G|1561
5LKS|1|L5|G|1562
5LKS|1|L5|A|1563
5LKS|1|L5|A|1564
5LKS|1|L5|A|1565
5LKS|1|L5|C|1566
5LKS|1|L5|U|1567
5LKS|1|L5|C|1568
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LR
- 60S ribosomal protein L19
- Chain Lp
- 60S ribosomal protein L37a
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SL
- 40S ribosomal protein S11
- Chain SN
- 40S ribosomal protein S13
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