HL_5LKS_116

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGGCGAAAGACUAAUC

Length

17 nucleotides

Bulged bases

5LKS|1|L5|G|1625, 5LKS|1|L5|A|1630, 5LKS|1|L5|G|1633, 5LKS|1|L5|A|1637, 5LKS|1|L5|A|1638, 5LKS|1|L5|U|1639

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|L5|G|1624
5LKS|1|L5|G|1625
5LKS|1|L5|G|1626
5LKS|1|L5|G|1627
5LKS|1|L5|C|1628
5LKS|1|L5|G|1629
5LKS|1|L5|A|1630
5LKS|1|L5|A|1631
5LKS|1|L5|A|1632
5LKS|1|L5|G|1633
5LKS|1|L5|A|1634
5LKS|1|L5|C|1635
5LKS|1|L5|U|1636
5LKS|1|L5|A|1637
5LKS|1|L5|A|1638
5LKS|1|L5|U|1639
5LKS|1|L5|C|1640

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37