HL_5LKS_118

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUAUAGACAGCAGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCGAAU

Length

72 nucleotides

Bulged bases

5LKS|1|L5|A|1960, 5LKS|1|L5|C|1971, 5LKS|1|L5|G|1972, 5LKS|1|L5|G|1975, 5LKS|1|L5|U|1980, 5LKS|1|L5|G|1981, 5LKS|1|L5|A|1984, 5LKS|1|L5|G|1988, 5LKS|1|L5|A|1990, 5LKS|1|L5|U|1992, 5LKS|1|L5|C|1993, 5LKS|1|L5|U|2004, 5LKS|1|L5|G|2007, 5LKS|1|L5|C|2011, 5LKS|1|L5|U|2015

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|L5|A|1956
5LKS|1|L5|U|1957
5LKS|1|L5|A|1958
5LKS|1|L5|U|1959
5LKS|1|L5|A|1960
5LKS|1|L5|G|1961
5LKS|1|L5|A|1962
5LKS|1|L5|C|1963
5LKS|1|L5|A|1964
5LKS|1|L5|G|1965
5LKS|1|L5|C|1966
5LKS|1|L5|A|1967
5LKS|1|L5|G|1968
5LKS|1|L5|G|1969
5LKS|1|L5|A|1970
5LKS|1|L5|C|1971
5LKS|1|L5|G|1972
5LKS|1|L5|G|1973
5LKS|1|L5|U|1974
5LKS|1|L5|G|1975
5LKS|1|L5|G|1976
5LKS|1|L5|C|1977
5LKS|1|L5|C|1978
5LKS|1|L5|A|1979
5LKS|1|L5|U|1980
5LKS|1|L5|G|1981
5LKS|1|L5|G|1982
5LKS|1|L5|A|1983
5LKS|1|L5|A|1984
5LKS|1|L5|G|1985
5LKS|1|L5|U|1986
5LKS|1|L5|C|1987
5LKS|1|L5|G|1988
5LKS|1|L5|G|1989
5LKS|1|L5|A|1990
5LKS|1|L5|A|1991
5LKS|1|L5|U|1992
5LKS|1|L5|C|1993
5LKS|1|L5|C|1994
5LKS|1|L5|G|1995
5LKS|1|L5|C|1996
5LKS|1|L5|U|1997
5LKS|1|L5|A|1998
5LKS|1|L5|A|1999
5LKS|1|L5|G|2000
5LKS|1|L5|G|2001
5LKS|1|L5|A|2002
5LKS|1|L5|G|2003
5LKS|1|L5|U|2004
5LKS|1|L5|G|2005
5LKS|1|L5|U|2006
5LKS|1|L5|G|2007
5LKS|1|L5|U|2008
5LKS|1|L5|A|2009
5LKS|1|L5|A|2010
5LKS|1|L5|C|2011
5LKS|1|L5|A|2012
5LKS|1|L5|A|2013
5LKS|1|L5|C|2014
5LKS|1|L5|U|2015
5LKS|1|L5|C|2016
5LKS|1|L5|A|2017
5LKS|1|L5|C|2018
5LKS|1|L5|C|2019
5LKS|1|L5|U|2020
5LKS|1|L5|G|2021
5LKS|1|L5|C|2022
5LKS|1|L5|C|2023
5LKS|1|L5|G|2024
5LKS|1|L5|A|2025
5LKS|1|L5|A|2026
5LKS|1|L5|U|2027

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LI

60S ribosomal protein L10-like

Chain Lm

Ubiquitin-60S ribosomal protein L40