HL_5LKS_127

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCAGAAGGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LKS_127 not in the Motif Atlas

Geometric match to HL_8H1B_001

Geometric discrepancy: 0.3708

The information below is about HL_8H1B_001

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_46665.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5LKS|1|L5|G|4269
5LKS|1|L5|C|4270
5LKS|1|L5|A|4271
5LKS|1|L5|G|4272
5LKS|1|L5|A|4273
5LKS|1|L5|A|4274
5LKS|1|L5|G|4275
5LKS|1|L5|G|4276
5LKS|1|L5|G|4277
5LKS|1|L5|C|4278

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10-like

Chain LT

60S ribosomal protein L21