HL_5LKS_130

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAGAGGC

Length

8 nucleotides

Bulged bases

5LKS|1|L5|G|4910, 5LKS|1|L5|A|4911, 5LKS|1|L5|G|4913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LKS_130 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.2159

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5LKS|1|L5|G|4907
5LKS|1|L5|G|4908
5LKS|1|L5|A|4909
5LKS|1|L5|G|4910
5LKS|1|L5|A|4911
5LKS|1|L5|G|4912
5LKS|1|L5|G|4913
5LKS|1|L5|C|4914

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a