HL_5LKS_131

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCUCCCUCGC

Length

10 nucleotides

Bulged bases

5LKS|1|L5|C|5023, 5LKS|1|L5|U|5026, 5LKS|1|L5|C|5027

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LKS_131 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3998

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

5LKS|1|L5|G|5020
5LKS|1|L5|C|5021
5LKS|1|L5|U|5022
5LKS|1|L5|C|5023
5LKS|1|L5|C|5024
5LKS|1|L5|C|5025
5LKS|1|L5|U|5026
5LKS|1|L5|C|5027
5LKS|1|L5|G|5028
5LKS|1|L5|C|5029

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LU

60S ribosomal protein L22

Chain SI

40S ribosomal protein S8