3D structure

PDB id
5LKS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure-function insights reveal the human ribosome as a cancer target for antibiotics
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CCACUCCCGACCCGGGGAG
Length
19 nucleotides
Bulged bases
5LKS|1|S2|A|493, 5LKS|1|S2|A|500, 5LKS|1|S2|C|502, 5LKS|1|S2|C|503, 5LKS|1|S2|G|507
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5LKS|1|S2|C|491
5LKS|1|S2|C|492
5LKS|1|S2|A|493
5LKS|1|S2|C|494
5LKS|1|S2|U|495
5LKS|1|S2|C|496
5LKS|1|S2|C|497
5LKS|1|S2|C|498
5LKS|1|S2|G|499
5LKS|1|S2|A|500
5LKS|1|S2|C|501
5LKS|1|S2|C|502
5LKS|1|S2|C|503
5LKS|1|S2|G|504
5LKS|1|S2|G|505
5LKS|1|S2|G|506
5LKS|1|S2|G|507
5LKS|1|S2|A|508
5LKS|1|S2|G|509

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SE
40S ribosomal protein S4, X isoform
Chain SJ
40S ribosomal protein S9
Chain SY
40S ribosomal protein S24

Coloring options:

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