HL_5LKS_150

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

5LKS|1|L5|G|2421, 5LKS|1|L5|U|2425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LKS_150 not in the Motif Atlas

Homologous match to HL_8CRE_031

Geometric discrepancy: 0.3026

The information below is about HL_8CRE_031

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

5LKS|1|L5|A|2420
5LKS|1|L5|G|2421
5LKS|1|L5|C|2422
5LKS|1|L5|A|2423
5LKS|1|L5|G|2424
5LKS|1|L5|U|2425
5LKS|1|L5|U|2426

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ll

60S ribosomal protein L39