HL_5LKS_154

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUGCAAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LKS_154 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3124

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5LKS|1|S2|U|1177
5LKS|1|S2|U|1178
5LKS|1|S2|G|1179
5LKS|1|S2|C|1180
5LKS|1|S2|A|1181
5LKS|1|S2|A|1182
5LKS|1|S2|A|1183
5LKS|1|S2|G|1184

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a