Loop HL_5LKS

3D structure

PDB id: 5LKS (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure-function insights reveal the human ribosome as a cancer target for antibiotics
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å

Loop

Sequence: ACUAGUUACGCGACCCCCGAGCGGUCGGCGUCCCCCAACUUCU
Length: 43 nucleotides
Bulged bases: 5LKS|1|S2|C|1403, 5LKS|1|S2|U|1404, 5LKS|1|S2|C|1416, 5LKS|1|S2|C|1418
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5LKS|1|S2|A|1402
5LKS|1|S2|C|1403
5LKS|1|S2|U|1404
5LKS|1|S2|A|1405
5LKS|1|S2|G|1406
5LKS|1|S2|U|1407
5LKS|1|S2|U|1408
5LKS|1|S2|A|1409
5LKS|1|S2|C|1410
5LKS|1|S2|G|1411
5LKS|1|S2|C|1412
5LKS|1|S2|G|1413
5LKS|1|S2|A|1414
5LKS|1|S2|C|1415
5LKS|1|S2|C|1416
5LKS|1|S2|C|1417
5LKS|1|S2|C|1418
5LKS|1|S2|C|1419
5LKS|1|S2|G|1420
5LKS|1|S2|A|1421
5LKS|1|S2|G|1422
5LKS|1|S2|C|1423
5LKS|1|S2|G|1424
5LKS|1|S2|G|1425
5LKS|1|S2|U|1426
5LKS|1|S2|C|1427
5LKS|1|S2|G|1428
5LKS|1|S2|G|1429
5LKS|1|S2|C|1430
5LKS|1|S2|G|1431
5LKS|1|S2|U|1432
5LKS|1|S2|C|1433
5LKS|1|S2|C|1434
5LKS|1|S2|C|1435
5LKS|1|S2|C|1436
5LKS|1|S2|C|1437
5LKS|1|S2|A|1438
5LKS|1|S2|A|1439
5LKS|1|S2|C|1440
5LKS|1|S2|U|1441
5LKS|1|S2|U|1442
5LKS|1|S2|C|1443
5LKS|1|S2|U|1444

Current chains

Chain S2: 18S ribosomal RNA

Nearby chains

Chain SQ: 40S ribosomal protein S16
Chain ST: 40S ribosomal protein S19
Chain SU: 40S ribosomal protein S20

HL_5LKS_155