HL_5LL6_003

3D structure

PDB id

5LL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

5LL6|1|2|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LL6_003 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.249

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5LL6|1|2|G|154
5LL6|1|2|U|155
5LL6|1|2|A|156
5LL6|1|2|A|157
5LL6|1|2|U|158
5LL6|1|2|U|159
5LL6|1|2|C|160

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain T

40S ribosomal protein S6-A

Chain d

40S ribosomal protein S24-A

Chain h

Translation initiation factor RLI1