HL_5LL6_021

3D structure

PDB id

5LL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LL6_021 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.2886

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5LL6|1|2|A|900
5LL6|1|2|G|901
5LL6|1|2|G|902
5LL6|1|2|U|903
5LL6|1|2|G|904
5LL6|1|2|A|905
5LL6|1|2|A|906
5LL6|1|2|A|907
5LL6|1|2|U|908
5LL6|1|2|U|909

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Z

40S ribosomal protein S14-A