HL_5LL6_029

3D structure

PDB id

5LL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGAAC

Length

6 nucleotides

Bulged bases

5LL6|1|2|A|1782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LL6_029 not in the Motif Atlas

Homologous match to HL_4V88_222

Geometric discrepancy: 0.3731

The information below is about HL_4V88_222

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5LL6|1|2|G|1778
5LL6|1|2|U|1779
5LL6|1|2|G|1780
5LL6|1|2|A|1781
5LL6|1|2|A|1782
5LL6|1|2|C|1783

Current chains

Chain 2

18S ribosomal RNA

Nearby chains