HL_5LMO_006

3D structure

PDB id

5LMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

5LMO|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LMO_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.1119

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5LMO|1|A|G|259
5LMO|1|A|G|260
5LMO|1|A|U|261
5LMO|1|A|A|262
5LMO|1|A|A|263
5LMO|1|A|U|264
5LMO|1|A|G|265
5LMO|1|A|G|266
5LMO|1|A|C|267

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20