HL_5LMQ_017
3D structure
- PDB id
- 5LMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex, open form (state-2A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 5LMQ|1|A|U|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LMQ_017 not in the Motif Atlas
- Homologous match to HL_4LFB_017
- Geometric discrepancy: 0.1637
- The information below is about HL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
5LMQ|1|A|G|786
5LMQ|1|A|A|787
5LMQ|1|A|U|788
5LMQ|1|A|U|789
5LMQ|1|A|A|790
5LMQ|1|A|G|791
5LMQ|1|A|A|792
5LMQ|1|A|U|793
5LMQ|1|A|A|794
5LMQ|1|A|C|795
5LMQ|1|A|C|796
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain K
- 30S ribosomal protein S11
- Chain X
- Translation initiation factor IF-3
- Chain Y
- mRNA
- Chain Z
- Transfer RNA; tRNA
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