3D structure

PDB id
5LMR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.45 Å

Loop

Sequence
CAGCCUGGUAG
Length
11 nucleotides
Bulged bases
5LMR|1|Z|G|18, 5LMR|1|Z|G|19, 5LMR|1|Z|U|20
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5LMR_033 not in the Motif Atlas
Homologous match to HL_4TUE_033
Geometric discrepancy: 0.1149
The information below is about HL_4TUE_033
Detailed Annotation
tRNA D-loop
Broad Annotation
No text annotation
Motif group
HL_93616.2
Basepair signature
cWW-cWS-F-F-F-F
Number of instances in this motif group
8

Unit IDs

5LMR|1|Z|C|13
5LMR|1|Z|A|14
5LMR|1|Z|G|15
5LMR|1|Z|C|16
5LMR|1|Z|C|17
5LMR|1|Z|U|17|||A
5LMR|1|Z|G|18
5LMR|1|Z|G|19
5LMR|1|Z|U|20
5LMR|1|Z|A|21
5LMR|1|Z|G|22

Current chains

Chain Z
tRNAi

Nearby chains

Chain X
Translation initiation factor IF-3

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0822 s