HL_5LMS_021

3D structure

PDB id

5LMS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2C)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GAAGCAACGC

Length

10 nucleotides

Bulged bases

5LMS|1|A|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LMS_021 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.2272

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5LMS|1|A|G|963
5LMS|1|A|A|964
5LMS|1|A|A|965
5LMS|1|A|G|966
5LMS|1|A|C|967
5LMS|1|A|A|968
5LMS|1|A|A|969
5LMS|1|A|C|970
5LMS|1|A|G|971
5LMS|1|A|C|972

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10

Chain Z

Transfer RNA; tRNA