HL_5LMS_033
3D structure
- PDB id
- 5LMS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 5LMS|1|Z|U|17|||A, 5LMS|1|Z|G|18, 5LMS|1|Z|G|19
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LMS_033 not in the Motif Atlas
- Homologous match to HL_4TUE_033
- Geometric discrepancy: 0.283
- The information below is about HL_4TUE_033
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_93616.2
- Basepair signature
- cWW-cWS-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
5LMS|1|Z|C|13
5LMS|1|Z|A|14
5LMS|1|Z|G|15
5LMS|1|Z|C|16
5LMS|1|Z|C|17
5LMS|1|Z|U|17|||A
5LMS|1|Z|G|18
5LMS|1|Z|G|19
5LMS|1|Z|U|20
5LMS|1|Z|A|21
5LMS|1|Z|G|22
Current chains
- Chain Z
- tRNAi
Nearby chains
- Chain X
- Translation initiation factor IF-3
Coloring options: