HL_5LMS_034
3D structure
- PDB id
- 5LMS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- G(OMC)UCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- 5LMS|1|Z|U|33
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LMS_034 not in the Motif Atlas
- Homologous match to HL_5E81_212
- Geometric discrepancy: 0.1998
- The information below is about HL_5E81_212
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
5LMS|1|Z|G|31
5LMS|1|Z|OMC|32
5LMS|1|Z|U|33
5LMS|1|Z|C|34
5LMS|1|Z|A|35
5LMS|1|Z|U|36
5LMS|1|Z|A|37
5LMS|1|Z|A|38
5LMS|1|Z|C|39
Current chains
- Chain Z
- tRNAi
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain I
- 30S ribosomal protein S9
- Chain X
- Translation initiation factor IF-3
- Chain Y
- mRNA
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